Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 PCED1CP-201ENST00000419887 785 ntBASIC13.44□□□□□ -0.26
HOXA1P49639 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC13.44□□□□□ -0.26
HOXA1P49639 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC13.44□□□□□ -0.26
HOXA1P49639 RBSN-204ENST00000449050 903 ntTSL 2 BASIC13.44□□□□□ -0.26
HOXA1P49639 BX005266.1-201ENST00000473402 457 ntBASIC13.44□□□□□ -0.26
HOXA1P49639 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC13.44□□□□□ -0.26
HOXA1P49639 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
HOXA1P49639 AC116407.4-201ENST00000623319 1061 ntBASIC13.44□□□□□ -0.26
HOXA1P49639 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 COL6A4P2-202ENST00000504443 2753 ntBASIC13.44□□□□□ -0.26
HOXA1P49639 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
HOXA1P49639 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC13.44□□□□□ -0.26
HOXA1P49639 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC13.44□□□□□ -0.26
HOXA1P49639 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC13.44□□□□□ -0.26
HOXA1P49639 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
HOXA1P49639 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HOXA1P49639 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC13.43□□□□□ -0.26
HOXA1P49639 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.43□□□□□ -0.26
HOXA1P49639 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.43□□□□□ -0.26
HOXA1P49639 DGCR9-201ENST00000609630 2415 ntBASIC13.43□□□□□ -0.26
HOXA1P49639 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 AL590787.1-201ENST00000568856 1315 ntBASIC13.43□□□□□ -0.26
HOXA1P49639 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC13.43□□□□□ -0.26
HOXA1P49639 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
HOXA1P49639 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
HOXA1P49639 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.43□□□□□ -0.26
HOXA1P49639 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.43□□□□□ -0.26
HOXA1P49639 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
HOXA1P49639 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
HOXA1P49639 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC13.43□□□□□ -0.26
HOXA1P49639 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC13.43□□□□□ -0.26
HOXA1P49639 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC13.43□□□□□ -0.26
HOXA1P49639 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC13.43□□□□□ -0.26
HOXA1P49639 AC012615.1-201ENST00000565797 1299 ntBASIC13.43□□□□□ -0.26
HOXA1P49639 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC13.43□□□□□ -0.26
HOXA1P49639 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC13.43□□□□□ -0.26
HOXA1P49639 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
HOXA1P49639 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 AL353135.1-201ENST00000606729 504 ntBASIC13.43□□□□□ -0.26
HOXA1P49639 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC13.43□□□□□ -0.26
HOXA1P49639 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC13.43□□□□□ -0.26
HOXA1P49639 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC13.43□□□□□ -0.26
HOXA1P49639 TOP3BP1-201ENST00000420768 1380 ntBASIC13.43□□□□□ -0.26
HOXA1P49639 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
HOXA1P49639 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC13.43□□□□□ -0.26
HOXA1P49639 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXA1P49639 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HOXA1P49639 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
HOXA1P49639 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.42□□□□□ -0.26
HOXA1P49639 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXA1P49639 AL596087.1-201ENST00000400979 1969 ntBASIC13.42□□□□□ -0.26
HOXA1P49639 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
HOXA1P49639 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXA1P49639 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXA1P49639 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXA1P49639 KRT18P21-201ENST00000515767 1272 ntBASIC13.42□□□□□ -0.26
HOXA1P49639 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC13.42□□□□□ -0.26
HOXA1P49639 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms