Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX1P39880 MPV17-205ENST00000402310 906 ntTSL 5 BASIC26.28■■□□□ 1.8
CUX1P39880 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC26.28■■□□□ 1.8
CUX1P39880 IMP3P2-201ENST00000489760 475 ntBASIC26.28■■□□□ 1.8
CUX1P39880 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CUX1P39880 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX1P39880 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
CUX1P39880 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX1P39880 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX1P39880 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX1P39880 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC26.28■■□□□ 1.8
CUX1P39880 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC26.27■■□□□ 1.8
CUX1P39880 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
CUX1P39880 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
CUX1P39880 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC26.27■■□□□ 1.8
CUX1P39880 FNTAP2-201ENST00000430308 634 ntBASIC26.27■■□□□ 1.8
CUX1P39880 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC26.27■■□□□ 1.8
CUX1P39880 UPF3AP2-201ENST00000457924 1132 ntBASIC26.27■■□□□ 1.8
CUX1P39880 AC073413.1-201ENST00000603927 732 ntBASIC26.27■■□□□ 1.8
CUX1P39880 AC091812.3-201ENST00000621362 345 ntBASIC26.27■■□□□ 1.8
CUX1P39880 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
CUX1P39880 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX1P39880 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC26.26■■□□□ 1.8
CUX1P39880 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
CUX1P39880 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CUX1P39880 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CUX1P39880 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
CUX1P39880 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CUX1P39880 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CUX1P39880 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
CUX1P39880 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC26.26■■□□□ 1.79
CUX1P39880 MIR648-201ENST00000385046 94 ntBASIC26.26■■□□□ 1.79
CUX1P39880 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC26.26■■□□□ 1.79
CUX1P39880 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC26.26■■□□□ 1.79
CUX1P39880 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC26.26■■□□□ 1.79
CUX1P39880 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC26.26■■□□□ 1.79
CUX1P39880 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CUX1P39880 PRSS30P-206ENST00000641773 873 ntBASIC26.26■■□□□ 1.79
CUX1P39880 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
CUX1P39880 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC26.26■■□□□ 1.79
CUX1P39880 AC022188.1-201ENST00000620960 1664 ntBASIC26.26■■□□□ 1.79
CUX1P39880 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
CUX1P39880 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC26.26■■□□□ 1.79
CUX1P39880 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CUX1P39880 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
CUX1P39880 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC26.25■■□□□ 1.79
CUX1P39880 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CUX1P39880 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC26.25■■□□□ 1.79
CUX1P39880 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
CUX1P39880 RNF41-210ENST00000552244 716 ntTSL 3 BASIC26.25■■□□□ 1.79
CUX1P39880 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC26.25■■□□□ 1.79
CUX1P39880 AC005730.2-201ENST00000564549 1184 ntBASIC26.25■■□□□ 1.79
CUX1P39880 KLK11-210ENST00000600362 759 ntTSL 3 BASIC26.25■■□□□ 1.79
CUX1P39880 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CUX1P39880 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
CUX1P39880 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CUX1P39880 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC26.25■■□□□ 1.79
CUX1P39880 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
CUX1P39880 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC26.24■■□□□ 1.79
CUX1P39880 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 AC079178.1-201ENST00000420915 656 ntBASIC26.24■■□□□ 1.79
CUX1P39880 AC044849.1-201ENST00000519737 1188 ntBASIC26.24■■□□□ 1.79
CUX1P39880 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC26.24■■□□□ 1.79
CUX1P39880 NKG7-204ENST00000595217 816 ntTSL 2 BASIC26.24■■□□□ 1.79
CUX1P39880 NDUFV2P1-201ENST00000596415 907 ntBASIC26.24■■□□□ 1.79
CUX1P39880 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC26.24■■□□□ 1.79
CUX1P39880 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC26.24■■□□□ 1.79
CUX1P39880 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC26.24■■□□□ 1.79
CUX1P39880 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC26.24■■□□□ 1.79
CUX1P39880 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC26.24■■□□□ 1.79
CUX1P39880 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 AC011477.6-201ENST00000604980 1927 ntBASIC26.24■■□□□ 1.79
CUX1P39880 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC26.24■■□□□ 1.79
CUX1P39880 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CUX1P39880 AL662890.1-201ENST00000396818 632 ntBASIC26.24■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms