Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.31■□□□□ 0.04
SDC1P18827 AC018892.3-201ENST00000623986 2499 ntBASIC15.31■□□□□ 0.04
SDC1P18827 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.31■□□□□ 0.04
SDC1P18827 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.31■□□□□ 0.04
SDC1P18827 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.31■□□□□ 0.04
SDC1P18827 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SDC1P18827 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.31■□□□□ 0.04
SDC1P18827 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDC1P18827 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SDC1P18827 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SDC1P18827 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDC1P18827 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDC1P18827 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDC1P18827 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.31■□□□□ 0.04
SDC1P18827 BNIP3P1-202ENST00000550043 1585 ntBASIC15.31■□□□□ 0.04
SDC1P18827 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.31■□□□□ 0.04
SDC1P18827 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDC1P18827 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.31■□□□□ 0.04
SDC1P18827 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.31■□□□□ 0.04
SDC1P18827 AC105250.1-201ENST00000509378 2057 ntBASIC15.31■□□□□ 0.04
SDC1P18827 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDC1P18827 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDC1P18827 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDC1P18827 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.31■□□□□ 0.04
SDC1P18827 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.3■□□□□ 0.04
SDC1P18827 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.3■□□□□ 0.04
SDC1P18827 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
SDC1P18827 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.3■□□□□ 0.04
SDC1P18827 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.3■□□□□ 0.04
SDC1P18827 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 RN7SL589P-201ENST00000481268 310 ntBASIC15.3■□□□□ 0.04
SDC1P18827 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.3■□□□□ 0.04
SDC1P18827 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.3■□□□□ 0.04
SDC1P18827 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.3■□□□□ 0.04
SDC1P18827 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.3■□□□□ 0.04
SDC1P18827 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.3■□□□□ 0.04
SDC1P18827 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.3■□□□□ 0.04
SDC1P18827 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.3■□□□□ 0.04
SDC1P18827 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.3■□□□□ 0.04
SDC1P18827 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.3■□□□□ 0.04
SDC1P18827 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.3■□□□□ 0.04
SDC1P18827 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
SDC1P18827 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDC1P18827 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
SDC1P18827 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.29■□□□□ 0.04
SDC1P18827 AC090616.6-203ENST00000579186 1945 ntBASIC15.29■□□□□ 0.04
SDC1P18827 AC087481.3-201ENST00000602886 1894 ntBASIC15.29■□□□□ 0.04
SDC1P18827 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.29■□□□□ 0.04
SDC1P18827 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.29■□□□□ 0.04
SDC1P18827 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SDC1P18827 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.29■□□□□ 0.04
SDC1P18827 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
SDC1P18827 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SDC1P18827 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
SDC1P18827 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SDC1P18827 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.29■□□□□ 0.04
SDC1P18827 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.29■□□□□ 0.04
SDC1P18827 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.29■□□□□ 0.04
SDC1P18827 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.29■□□□□ 0.04
SDC1P18827 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.29■□□□□ 0.04
SDC1P18827 RNA5SP410-201ENST00000516285 106 ntBASIC15.29■□□□□ 0.04
SDC1P18827 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.29■□□□□ 0.04
SDC1P18827 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.29■□□□□ 0.04
SDC1P18827 FAM86C2P-203ENST00000528684 1004 ntBASIC15.29■□□□□ 0.04
SDC1P18827 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.29■□□□□ 0.04
SDC1P18827 AC243562.1-201ENST00000560672 389 ntBASIC15.29■□□□□ 0.04
SDC1P18827 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms