Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HOXC11O43248 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HOXC11O43248 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HOXC11O43248 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXC11O43248 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC11O43248 AC136604.1-201ENST00000418535 575 ntBASIC16.28■□□□□ 0.2
HOXC11O43248 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC11O43248 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXC11O43248 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXC11O43248 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXC11O43248 IGHV3-71-201ENST00000523324 359 ntBASIC16.28■□□□□ 0.2
HOXC11O43248 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC11O43248 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC11O43248 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HOXC11O43248 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HOXC11O43248 MIR6752-201ENST00000618442 71 ntBASIC16.28■□□□□ 0.2
HOXC11O43248 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXC11O43248 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC11O43248 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC11O43248 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXC11O43248 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC11O43248 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC11O43248 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXC11O43248 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
HOXC11O43248 REXO1L1P-202ENST00000608646 1974 ntBASIC16.27■□□□□ 0.2
HOXC11O43248 AC134407.2-201ENST00000625089 1978 ntBASIC16.27■□□□□ 0.2
HOXC11O43248 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC11O43248 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC11O43248 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC11O43248 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC11O43248 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
HOXC11O43248 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.27■□□□□ 0.2
HOXC11O43248 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC11O43248 AC092850.2-201ENST00000623821 2697 ntBASIC16.27■□□□□ 0.2
HOXC11O43248 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC11O43248 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC11O43248 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC11O43248 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
HOXC11O43248 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC11O43248 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC11O43248 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC11O43248 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC11O43248 TOMM22P5-201ENST00000416399 439 ntBASIC16.27■□□□□ 0.2
HOXC11O43248 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC11O43248 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC11O43248 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC11O43248 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC11O43248 AC007389.4-201ENST00000454674 793 ntBASIC16.27■□□□□ 0.2
HOXC11O43248 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.27■□□□□ 0.2
HOXC11O43248 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.27■□□□□ 0.2
HOXC11O43248 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC11O43248 HILS1-202ENST00000545329 423 ntBASIC16.27■□□□□ 0.2
HOXC11O43248 HNRNPUP1-201ENST00000554987 333 ntBASIC16.27■□□□□ 0.2
HOXC11O43248 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.27■□□□□ 0.2
HOXC11O43248 AL450472.2-201ENST00000603663 1156 ntBASIC16.27■□□□□ 0.2
HOXC11O43248 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
HOXC11O43248 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.27■□□□□ 0.2
HOXC11O43248 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.27■□□□□ 0.2
HOXC11O43248 AL033527.5-201ENST00000641382 801 ntBASIC16.27■□□□□ 0.2
HOXC11O43248 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HOXC11O43248 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.27■□□□□ 0.2
HOXC11O43248 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC11O43248 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC11O43248 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.19
HOXC11O43248 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXC11O43248 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HOXC11O43248 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXC11O43248 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXC11O43248 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.27■□□□□ 0.19
HOXC11O43248 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXC11O43248 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXC11O43248 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.27■□□□□ 0.19
HOXC11O43248 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HOXC11O43248 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
HOXC11O43248 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC11O43248 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.26■□□□□ 0.19
HOXC11O43248 AC006449.6-201ENST00000612330 2296 ntBASIC16.26■□□□□ 0.19
HOXC11O43248 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC11O43248 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
HOXC11O43248 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC11O43248 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
HOXC11O43248 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC11O43248 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC11O43248 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC11O43248 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.26■□□□□ 0.19
HOXC11O43248 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC11O43248 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC11O43248 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC11O43248 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC11O43248 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.26■□□□□ 0.19
HOXC11O43248 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HOXC11O43248 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms