Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 AC140479.7-201ENST00000636301 2332 ntBASIC14.03□□□□□ -0.16
SHISA3A0PJX4 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHISA3A0PJX4 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SHISA3A0PJX4 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHISA3A0PJX4 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SHISA3A0PJX4 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHISA3A0PJX4 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
SHISA3A0PJX4 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHISA3A0PJX4 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.02□□□□□ -0.16
SHISA3A0PJX4 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHISA3A0PJX4 AC023024.2-201ENST00000623561 1993 ntBASIC14.02□□□□□ -0.16
SHISA3A0PJX4 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SHISA3A0PJX4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SHISA3A0PJX4 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SHISA3A0PJX4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
SHISA3A0PJX4 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 PCED1CP-201ENST00000419887 785 ntBASIC14.02□□□□□ -0.17
SHISA3A0PJX4 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 FGFR3P6-201ENST00000457012 610 ntBASIC14.02□□□□□ -0.17
SHISA3A0PJX4 RIN3-211ENST00000557762 517 ntTSL 3 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 PAM16-208ENST00000573553 722 ntTSL 2 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 AC025062.2-201ENST00000605477 670 ntBASIC14.02□□□□□ -0.17
SHISA3A0PJX4 AC021097.1-201ENST00000607902 574 ntBASIC14.02□□□□□ -0.17
SHISA3A0PJX4 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 AC079416.2-201ENST00000625035 1193 ntBASIC14.02□□□□□ -0.17
SHISA3A0PJX4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SHISA3A0PJX4 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 AP001282.1-201ENST00000531301 1499 ntBASIC14.01□□□□□ -0.17
SHISA3A0PJX4 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 HMGA1P7-201ENST00000406908 502 ntBASIC14.01□□□□□ -0.17
SHISA3A0PJX4 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 AL031055.1-201ENST00000606362 631 ntBASIC14.01□□□□□ -0.17
SHISA3A0PJX4 AL355877.3-201ENST00000622820 899 ntBASIC14.01□□□□□ -0.17
SHISA3A0PJX4 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SHISA3A0PJX4 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms