Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 TEX30-205ENST00000376029 959 ntTSL 2 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HIF3AQ9Y2N7 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 AL355306.1-201ENST00000415580 579 ntBASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 AL138918.1-201ENST00000568306 659 ntBASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 AC104640.1-201ENST00000562617 2109 ntBASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HIF3AQ9Y2N7 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 AC022532.1-201ENST00000624563 1728 ntBASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 FOXO1B-201ENST00000504678 1527 ntBASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HIF3AQ9Y2N7 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms