Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.46■□□□□ 0.23
CDX2Q99626 AL139008.1-201ENST00000437894 228 ntBASIC16.46■□□□□ 0.23
CDX2Q99626 PIN4P1-201ENST00000451079 396 ntBASIC16.46■□□□□ 0.23
CDX2Q99626 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CDX2Q99626 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CDX2Q99626 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.46■□□□□ 0.23
CDX2Q99626 AC242376.1-201ENST00000559033 726 ntBASIC16.46■□□□□ 0.23
CDX2Q99626 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
CDX2Q99626 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDX2Q99626 RN7SL713P-201ENST00000582127 302 ntBASIC16.46■□□□□ 0.23
CDX2Q99626 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC16.46■□□□□ 0.23
CDX2Q99626 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.46■□□□□ 0.23
CDX2Q99626 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC16.46■□□□□ 0.23
CDX2Q99626 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.46■□□□□ 0.23
CDX2Q99626 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.46■□□□□ 0.23
CDX2Q99626 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.46■□□□□ 0.23
CDX2Q99626 PRSS30P-206ENST00000641773 873 ntBASIC16.46■□□□□ 0.23
CDX2Q99626 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.46■□□□□ 0.23
CDX2Q99626 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CDX2Q99626 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CDX2Q99626 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDX2Q99626 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC16.46■□□□□ 0.23
CDX2Q99626 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CDX2Q99626 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.46■□□□□ 0.23
CDX2Q99626 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CDX2Q99626 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.46■□□□□ 0.22
CDX2Q99626 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CDX2Q99626 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.46■□□□□ 0.22
CDX2Q99626 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CDX2Q99626 LETM1P2-201ENST00000597330 2178 ntBASIC16.45■□□□□ 0.22
CDX2Q99626 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.45■□□□□ 0.22
CDX2Q99626 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.45■□□□□ 0.22
CDX2Q99626 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDX2Q99626 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX2Q99626 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX2Q99626 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDX2Q99626 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CDX2Q99626 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.45■□□□□ 0.22
CDX2Q99626 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.45■□□□□ 0.22
CDX2Q99626 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CDX2Q99626 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.45■□□□□ 0.22
CDX2Q99626 KLF2P2-201ENST00000416807 1039 ntBASIC16.45■□□□□ 0.22
CDX2Q99626 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC16.45■□□□□ 0.22
CDX2Q99626 AC104073.2-201ENST00000453737 312 ntBASIC16.45■□□□□ 0.22
CDX2Q99626 RNMTL1P1-201ENST00000454103 560 ntBASIC16.45■□□□□ 0.22
CDX2Q99626 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC16.45■□□□□ 0.22
CDX2Q99626 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC16.45■□□□□ 0.22
CDX2Q99626 AL022344.2-201ENST00000568976 968 ntBASIC16.45■□□□□ 0.22
CDX2Q99626 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.45■□□□□ 0.22
CDX2Q99626 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX2Q99626 YRDCP1-201ENST00000621419 643 ntBASIC16.45■□□□□ 0.22
CDX2Q99626 AC004923.1-202ENST00000642106 209 ntBASIC16.45■□□□□ 0.22
CDX2Q99626 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.45■□□□□ 0.22
CDX2Q99626 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC16.45■□□□□ 0.22
CDX2Q99626 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CDX2Q99626 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX2Q99626 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CDX2Q99626 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CDX2Q99626 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDX2Q99626 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDX2Q99626 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX2Q99626 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CDX2Q99626 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.45■□□□□ 0.22
CDX2Q99626 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX2Q99626 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.44■□□□□ 0.22
CDX2Q99626 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
CDX2Q99626 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CDX2Q99626 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CDX2Q99626 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CDX2Q99626 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CDX2Q99626 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
CDX2Q99626 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC16.44■□□□□ 0.22
CDX2Q99626 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.44■□□□□ 0.22
CDX2Q99626 PHKG1P2-201ENST00000457537 863 ntBASIC16.44■□□□□ 0.22
CDX2Q99626 GAPDHP40-201ENST00000505218 1006 ntBASIC16.44■□□□□ 0.22
CDX2Q99626 IGHV3-37-201ENST00000518544 340 ntBASIC16.44■□□□□ 0.22
CDX2Q99626 ALG1L13P-202ENST00000519320 584 ntBASIC16.44■□□□□ 0.22
CDX2Q99626 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC16.44■□□□□ 0.22
CDX2Q99626 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.44■□□□□ 0.22
CDX2Q99626 DNM1P30-201ENST00000563586 452 ntBASIC16.44■□□□□ 0.22
CDX2Q99626 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 RN7SL596P-201ENST00000582123 288 ntBASIC16.44■□□□□ 0.22
CDX2Q99626 RN7SL163P-201ENST00000583100 276 ntBASIC16.44■□□□□ 0.22
CDX2Q99626 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16.44■□□□□ 0.22
CDX2Q99626 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.44■□□□□ 0.22
CDX2Q99626 BNIP3P13-201ENST00000599968 566 ntBASIC16.44■□□□□ 0.22
CDX2Q99626 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms