Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
USP28Q96RU2 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
USP28Q96RU2 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
USP28Q96RU2 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP28Q96RU2 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.39■□□□□ 0.53
USP28Q96RU2 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
USP28Q96RU2 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.39■□□□□ 0.53
USP28Q96RU2 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
USP28Q96RU2 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.38■□□□□ 0.53
USP28Q96RU2 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.38■□□□□ 0.53
USP28Q96RU2 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.38■□□□□ 0.53
USP28Q96RU2 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.38■□□□□ 0.53
USP28Q96RU2 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.38■□□□□ 0.53
USP28Q96RU2 AC243562.1-201ENST00000560672 389 ntBASIC18.38■□□□□ 0.53
USP28Q96RU2 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.38■□□□□ 0.53
USP28Q96RU2 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.38■□□□□ 0.53
USP28Q96RU2 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.38■□□□□ 0.53
USP28Q96RU2 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.38■□□□□ 0.53
USP28Q96RU2 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.38■□□□□ 0.53
USP28Q96RU2 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 TNRC18P2-201ENST00000417666 2714 ntBASIC18.38■□□□□ 0.53
USP28Q96RU2 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 AC006486.2-201ENST00000624246 2199 ntBASIC18.38■□□□□ 0.53
USP28Q96RU2 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC18.38■□□□□ 0.53
USP28Q96RU2 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
USP28Q96RU2 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP28Q96RU2 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.38■□□□□ 0.53
USP28Q96RU2 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.38■□□□□ 0.53
USP28Q96RU2 AL136982.4-201ENST00000437689 1740 ntBASIC18.37■□□□□ 0.53
USP28Q96RU2 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC18.37■□□□□ 0.53
USP28Q96RU2 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.37■□□□□ 0.53
USP28Q96RU2 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
USP28Q96RU2 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18.37■□□□□ 0.53
USP28Q96RU2 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
USP28Q96RU2 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.37■□□□□ 0.53
USP28Q96RU2 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.37■□□□□ 0.53
USP28Q96RU2 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.37■□□□□ 0.53
USP28Q96RU2 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.37■□□□□ 0.53
USP28Q96RU2 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.37■□□□□ 0.53
USP28Q96RU2 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.37■□□□□ 0.53
USP28Q96RU2 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.37■□□□□ 0.53
USP28Q96RU2 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
USP28Q96RU2 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.37■□□□□ 0.53
USP28Q96RU2 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 AC087481.3-201ENST00000602886 1894 ntBASIC18.37■□□□□ 0.53
USP28Q96RU2 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.37■□□□□ 0.53
USP28Q96RU2 AC023157.3-201ENST00000619086 2088 ntBASIC18.37■□□□□ 0.53
USP28Q96RU2 AL109954.1-202ENST00000564051 2148 ntBASIC18.37■□□□□ 0.53
USP28Q96RU2 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP28Q96RU2 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.37■□□□□ 0.53
USP28Q96RU2 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
USP28Q96RU2 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
USP28Q96RU2 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.36■□□□□ 0.53
USP28Q96RU2 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
USP28Q96RU2 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP28Q96RU2 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.36■□□□□ 0.53
USP28Q96RU2 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP28Q96RU2 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
USP28Q96RU2 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP28Q96RU2 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.36■□□□□ 0.53
USP28Q96RU2 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP28Q96RU2 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
USP28Q96RU2 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.36■□□□□ 0.53
USP28Q96RU2 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
USP28Q96RU2 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP28Q96RU2 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP28Q96RU2 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.36■□□□□ 0.53
USP28Q96RU2 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.36■□□□□ 0.53
USP28Q96RU2 KRT8P48-201ENST00000515599 1220 ntBASIC18.36■□□□□ 0.53
USP28Q96RU2 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.36■□□□□ 0.53
USP28Q96RU2 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms