Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 AC063926.3-201ENST00000624734 5658 ntBASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 CNN2P2-201ENST00000443536 909 ntBASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 CNN2P3-201ENST00000450201 906 ntBASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 KLF2P3-201ENST00000451977 1087 ntBASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 AL136317.3-201ENST00000618497 906 ntBASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 AL390754.1-201ENST00000619088 582 ntBASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 AL603832.2-201ENST00000566195 2125 ntBASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.21■□□□□ 0.67
CHMP4CQ96CF2 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
CHMP4CQ96CF2 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 AC245100.5-201ENST00000452108 331 ntBASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 AC105233.2-201ENST00000523697 349 ntBASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 AF228730.5-201ENST00000530288 346 ntBASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 LINC02084-201ENST00000606069 1096 ntBASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CHMP4CQ96CF2 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms