Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 FZD10-202ENST00000539839 3282 ntBASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 RPL13AP19-201ENST00000434320 584 ntBASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 SDHD-202ENST00000525291 790 ntTSL 3 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 RN7SL736P-201ENST00000613111 269 ntBASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 AP000346.4-201ENST00000614827 381 ntBASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 AC132938.4-201ENST00000623835 848 ntBASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 CASP16P-204ENST00000635032 809 ntBASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 SNX33P1-201ENST00000592116 1762 ntBASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 AC016396.2-201ENST00000562575 1417 ntBASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC1BQ8NDV3 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
SMC1BQ8NDV3 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.89■□□□□ 0.62
SMC1BQ8NDV3 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SMC1BQ8NDV3 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.89■□□□□ 0.62
SMC1BQ8NDV3 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.89■□□□□ 0.62
SMC1BQ8NDV3 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
SMC1BQ8NDV3 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SMC1BQ8NDV3 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.89■□□□□ 0.62
SMC1BQ8NDV3 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 UFM1-202ENST00000379649 846 ntTSL 4 BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 AC007274.2-201ENST00000421675 662 ntBASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 HSPB1P2-201ENST00000448722 546 ntBASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 AC011491.1-203ENST00000637688 543 ntBASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 AC133963.1-201ENST00000504166 1679 ntBASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SMC1BQ8NDV3 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 AC074338.1-201ENST00000416825 156 ntBASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 LY6E-208ENST00000520531 490 ntTSL 2 BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC1BQ8NDV3 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms