Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 AC018695.7-201ENST00000624587 2492 ntBASIC19.82■□□□□ 0.76
SYNE4Q8N205 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 HAUS4P1-201ENST00000406739 1145 ntBASIC19.82■□□□□ 0.76
SYNE4Q8N205 AL442647.2-201ENST00000429864 857 ntBASIC19.82■□□□□ 0.76
SYNE4Q8N205 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 CTBP2P5-201ENST00000454986 1264 ntBASIC19.82■□□□□ 0.76
SYNE4Q8N205 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 AC233724.13-201ENST00000598383 410 ntBASIC19.82■□□□□ 0.76
SYNE4Q8N205 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SYNE4Q8N205 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.82■□□□□ 0.76
SYNE4Q8N205 PDIA3P1-201ENST00000471856 1510 ntBASIC19.81■□□□□ 0.76
SYNE4Q8N205 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 AC136604.1-201ENST00000418535 575 ntBASIC19.81■□□□□ 0.76
SYNE4Q8N205 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 AC133539.2-201ENST00000604757 467 ntBASIC19.81■□□□□ 0.76
SYNE4Q8N205 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SYNE4Q8N205 HNRNPA1P48-201ENST00000562726 1377 ntBASIC19.81■□□□□ 0.76
SYNE4Q8N205 AC006449.6-201ENST00000612330 2296 ntBASIC19.81■□□□□ 0.76
SYNE4Q8N205 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE4Q8N205 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SYNE4Q8N205 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SYNE4Q8N205 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SYNE4Q8N205 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SYNE4Q8N205 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
SYNE4Q8N205 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SYNE4Q8N205 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 KLF2P4-201ENST00000451959 1225 ntBASIC19.8■□□□□ 0.76
SYNE4Q8N205 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC19.8■□□□□ 0.76
SYNE4Q8N205 AC124283.3-201ENST00000570869 594 ntBASIC19.8■□□□□ 0.76
SYNE4Q8N205 AL450472.2-201ENST00000603663 1156 ntBASIC19.8■□□□□ 0.76
SYNE4Q8N205 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC19.8■□□□□ 0.76
SYNE4Q8N205 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
SYNE4Q8N205 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SYNE4Q8N205 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms