Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NUP54Q7Z3B4 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 AL365203.3-201ENST00000609742 2057 ntBASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 MIR648-201ENST00000385046 94 ntBASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 FAM86GP-201ENST00000448322 971 ntBASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 AC092364.2-201ENST00000596710 2692 ntBASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.9□□□□□ -0.02
NUP54Q7Z3B4 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
NUP54Q7Z3B4 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms