Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP54Q70EL1 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.9■□□□□ 0.94
USP54Q70EL1 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP54Q70EL1 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.9■□□□□ 0.94
USP54Q70EL1 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP54Q70EL1 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP54Q70EL1 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC20.9■□□□□ 0.94
USP54Q70EL1 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP54Q70EL1 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP54Q70EL1 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
USP54Q70EL1 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC20.89■□□□□ 0.94
USP54Q70EL1 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
USP54Q70EL1 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC20.89■□□□□ 0.94
USP54Q70EL1 AL591846.1-201ENST00000451736 433 ntBASIC20.89■□□□□ 0.94
USP54Q70EL1 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC20.89■□□□□ 0.94
USP54Q70EL1 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
USP54Q70EL1 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC20.89■□□□□ 0.94
USP54Q70EL1 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP54Q70EL1 AC073413.1-201ENST00000603927 732 ntBASIC20.89■□□□□ 0.94
USP54Q70EL1 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP54Q70EL1 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
USP54Q70EL1 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
USP54Q70EL1 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP54Q70EL1 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
USP54Q70EL1 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC20.89■□□□□ 0.93
USP54Q70EL1 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP54Q70EL1 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC20.89■□□□□ 0.93
USP54Q70EL1 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP54Q70EL1 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP54Q70EL1 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP54Q70EL1 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.93
USP54Q70EL1 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP54Q70EL1 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP54Q70EL1 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP54Q70EL1 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP54Q70EL1 AL139094.1-201ENST00000405549 1188 ntBASIC20.89■□□□□ 0.93
USP54Q70EL1 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC20.89■□□□□ 0.93
USP54Q70EL1 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
USP54Q70EL1 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP54Q70EL1 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC20.89■□□□□ 0.93
USP54Q70EL1 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC20.89■□□□□ 0.93
USP54Q70EL1 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC20.89■□□□□ 0.93
USP54Q70EL1 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP54Q70EL1 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.88■□□□□ 0.93
USP54Q70EL1 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.88■□□□□ 0.93
USP54Q70EL1 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC20.88■□□□□ 0.93
USP54Q70EL1 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.88■□□□□ 0.93
USP54Q70EL1 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP54Q70EL1 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP54Q70EL1 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP54Q70EL1 AGER-203ENST00000375065 665 ntTSL 2 BASIC20.88■□□□□ 0.93
USP54Q70EL1 CALR4P-201ENST00000431943 946 ntBASIC20.88■□□□□ 0.93
USP54Q70EL1 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC20.88■□□□□ 0.93
USP54Q70EL1 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP54Q70EL1 RPSAP36-202ENST00000494591 1261 ntBASIC20.88■□□□□ 0.93
USP54Q70EL1 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC20.88■□□□□ 0.93
USP54Q70EL1 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC20.88■□□□□ 0.93
USP54Q70EL1 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC20.88■□□□□ 0.93
USP54Q70EL1 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC20.88■□□□□ 0.93
USP54Q70EL1 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP54Q70EL1 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
USP54Q70EL1 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC20.88■□□□□ 0.93
USP54Q70EL1 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC20.88■□□□□ 0.93
USP54Q70EL1 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC20.88■□□□□ 0.93
USP54Q70EL1 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.88■□□□□ 0.93
USP54Q70EL1 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
USP54Q70EL1 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC20.87■□□□□ 0.93
USP54Q70EL1 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
USP54Q70EL1 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
USP54Q70EL1 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC20.87■□□□□ 0.93
USP54Q70EL1 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC20.87■□□□□ 0.93
USP54Q70EL1 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC20.87■□□□□ 0.93
USP54Q70EL1 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC20.87■□□□□ 0.93
USP54Q70EL1 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC20.87■□□□□ 0.93
USP54Q70EL1 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC20.87■□□□□ 0.93
USP54Q70EL1 RN7SL48P-201ENST00000579283 293 ntBASIC20.87■□□□□ 0.93
USP54Q70EL1 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC20.87■□□□□ 0.93
USP54Q70EL1 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
USP54Q70EL1 AL096828.3-201ENST00000615354 462 ntBASIC20.87■□□□□ 0.93
USP54Q70EL1 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC20.87■□□□□ 0.93
USP54Q70EL1 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
USP54Q70EL1 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
USP54Q70EL1 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC20.87■□□□□ 0.93
USP54Q70EL1 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 AC005332.8-201ENST00000622750 2735 ntBASIC20.87■□□□□ 0.93
USP54Q70EL1 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms