Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 ARMC10P1-201ENST00000313754 855 ntBASIC14.48□□□□□ -0.09
CCDC58Q4VC31 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 MSRA-206ENST00000521209 814 ntTSL 3 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 NME3-204ENST00000563498 920 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 BCL10-202ENST00000620248 774 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 AC005622.1-201ENST00000636801 1703 ntBASIC14.48□□□□□ -0.09
CCDC58Q4VC31 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC58Q4VC31 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.47□□□□□ -0.09
CCDC58Q4VC31 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 EMD-201ENST00000369835 966 ntTSL 3 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 NPAP1P7-201ENST00000613027 823 ntBASIC14.47□□□□□ -0.09
CCDC58Q4VC31 WT1-AS_2.1-201ENST00000613208 137 ntBASIC14.47□□□□□ -0.09
CCDC58Q4VC31 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CCDC58Q4VC31 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 AC023157.3-201ENST00000619086 2088 ntBASIC14.46□□□□□ -0.09
CCDC58Q4VC31 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
CCDC58Q4VC31 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms