Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 AL354877.1-201ENST00000424412 413 ntBASIC16.66■□□□□ 0.26
CHD9Q3L8U1 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 IQSEC3P1-201ENST00000538799 536 ntBASIC16.66■□□□□ 0.26
CHD9Q3L8U1 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 RN7SL774P-201ENST00000577467 290 ntBASIC16.66■□□□□ 0.26
CHD9Q3L8U1 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 AC005915.1-201ENST00000624912 2018 ntBASIC16.66■□□□□ 0.26
CHD9Q3L8U1 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHD9Q3L8U1 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 AC132938.4-201ENST00000623835 848 ntBASIC16.65■□□□□ 0.26
CHD9Q3L8U1 CU633904.3-201ENST00000624042 1029 ntBASIC16.65■□□□□ 0.26
CHD9Q3L8U1 HLA-C-210ENST00000640219 976 ntBASIC16.65■□□□□ 0.26
CHD9Q3L8U1 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.65■□□□□ 0.26
CHD9Q3L8U1 AP003171.2-201ENST00000528208 925 ntBASIC16.65■□□□□ 0.26
CHD9Q3L8U1 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHD9Q3L8U1 AC011676.5-201ENST00000624864 2660 ntBASIC16.65■□□□□ 0.26
CHD9Q3L8U1 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CHD9Q3L8U1 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.64■□□□□ 0.26
CHD9Q3L8U1 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 AC243562.2-201ENST00000561247 970 ntBASIC16.64■□□□□ 0.25
CHD9Q3L8U1 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.64■□□□□ 0.25
CHD9Q3L8U1 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms