Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.11□□□□□ -0.15
TFF3Q07654 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC14.11□□□□□ -0.15
TFF3Q07654 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
TFF3Q07654 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.11□□□□□ -0.15
TFF3Q07654 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC14.11□□□□□ -0.15
TFF3Q07654 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
TFF3Q07654 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
TFF3Q07654 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.11□□□□□ -0.15
TFF3Q07654 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
TFF3Q07654 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.11□□□□□ -0.15
TFF3Q07654 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.11□□□□□ -0.15
TFF3Q07654 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.11□□□□□ -0.15
TFF3Q07654 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.11□□□□□ -0.15
TFF3Q07654 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.11□□□□□ -0.15
TFF3Q07654 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC14.11□□□□□ -0.15
TFF3Q07654 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.11□□□□□ -0.15
TFF3Q07654 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
TFF3Q07654 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.11□□□□□ -0.15
TFF3Q07654 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.11□□□□□ -0.15
TFF3Q07654 RARRES2P5-201ENST00000564013 466 ntBASIC14.11□□□□□ -0.15
TFF3Q07654 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
TFF3Q07654 AC015936.2-201ENST00000593177 259 ntBASIC14.11□□□□□ -0.15
TFF3Q07654 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.11□□□□□ -0.15
TFF3Q07654 MIR6775-201ENST00000617557 69 ntBASIC14.11□□□□□ -0.15
TFF3Q07654 RPSAP52-203ENST00000622976 1023 ntBASIC14.11□□□□□ -0.15
TFF3Q07654 AL033527.5-201ENST00000641382 801 ntBASIC14.11□□□□□ -0.15
TFF3Q07654 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
TFF3Q07654 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
TFF3Q07654 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
TFF3Q07654 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
TFF3Q07654 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TFF3Q07654 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
TFF3Q07654 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
TFF3Q07654 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
TFF3Q07654 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TFF3Q07654 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.1□□□□□ -0.15
TFF3Q07654 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC14.1□□□□□ -0.15
TFF3Q07654 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
TFF3Q07654 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
TFF3Q07654 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
TFF3Q07654 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.1□□□□□ -0.15
TFF3Q07654 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.1□□□□□ -0.15
TFF3Q07654 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.1□□□□□ -0.15
TFF3Q07654 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TFF3Q07654 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TFF3Q07654 FO393414.2-201ENST00000405153 598 ntBASIC14.1□□□□□ -0.15
TFF3Q07654 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC14.1□□□□□ -0.15
TFF3Q07654 KRT223P-202ENST00000449164 1292 ntBASIC14.1□□□□□ -0.15
TFF3Q07654 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.1□□□□□ -0.15
TFF3Q07654 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.1□□□□□ -0.15
TFF3Q07654 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC14.1□□□□□ -0.15
TFF3Q07654 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
TFF3Q07654 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.1□□□□□ -0.15
TFF3Q07654 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
TFF3Q07654 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.1□□□□□ -0.15
TFF3Q07654 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.1□□□□□ -0.15
TFF3Q07654 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.1□□□□□ -0.15
TFF3Q07654 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
TFF3Q07654 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
TFF3Q07654 CICP6-201ENST00000457191 2729 ntBASIC14.1□□□□□ -0.15
TFF3Q07654 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TFF3Q07654 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TFF3Q07654 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
TFF3Q07654 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.09□□□□□ -0.15
TFF3Q07654 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
TFF3Q07654 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 ANKRD19P-201ENST00000338192 862 ntBASIC14.09□□□□□ -0.15
TFF3Q07654 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TFF3Q07654 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.09□□□□□ -0.15
TFF3Q07654 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC14.09□□□□□ -0.15
TFF3Q07654 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC14.09□□□□□ -0.15
TFF3Q07654 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms