Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC13.03□□□□□ -0.32
CX3CL1P78423 U82695.1-201ENST00000635752 1889 ntBASIC13.03□□□□□ -0.32
CX3CL1P78423 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC13.03□□□□□ -0.32
CX3CL1P78423 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC13.03□□□□□ -0.32
CX3CL1P78423 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC13.03□□□□□ -0.32
CX3CL1P78423 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC13.03□□□□□ -0.32
CX3CL1P78423 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC13.03□□□□□ -0.32
CX3CL1P78423 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC13.03□□□□□ -0.32
CX3CL1P78423 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CX3CL1P78423 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CX3CL1P78423 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.03□□□□□ -0.32
CX3CL1P78423 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CL1P78423 AMT-233ENST00000636522 1620 ntTSL 2 BASIC13.02□□□□□ -0.32
CX3CL1P78423 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CL1P78423 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
CX3CL1P78423 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CL1P78423 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.32
CX3CL1P78423 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CL1P78423 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CL1P78423 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CL1P78423 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
CX3CL1P78423 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CL1P78423 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
CX3CL1P78423 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CX3CL1P78423 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CX3CL1P78423 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CX3CL1P78423 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 CD82-202ENST00000342935 967 ntTSL 5 BASIC13.02□□□□□ -0.33
CX3CL1P78423 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 BX842568.4-201ENST00000421222 227 ntBASIC13.02□□□□□ -0.33
CX3CL1P78423 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
CX3CL1P78423 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.02□□□□□ -0.33
CX3CL1P78423 AC093724.1-201ENST00000448659 1027 ntBASIC13.02□□□□□ -0.33
CX3CL1P78423 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC13.02□□□□□ -0.33
CX3CL1P78423 AL135744.1-201ENST00000565098 629 ntBASIC13.02□□□□□ -0.33
CX3CL1P78423 MIR3687-2-201ENST00000577708 61 ntBASIC13.02□□□□□ -0.33
CX3CL1P78423 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC13.02□□□□□ -0.33
CX3CL1P78423 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
CX3CL1P78423 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC13.02□□□□□ -0.33
CX3CL1P78423 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
CX3CL1P78423 MIR3687-1-201ENST00000614492 61 ntBASIC13.02□□□□□ -0.33
CX3CL1P78423 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.02□□□□□ -0.33
CX3CL1P78423 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.33
CX3CL1P78423 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 AC006449.6-201ENST00000612330 2296 ntBASIC13.02□□□□□ -0.33
CX3CL1P78423 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC13.02□□□□□ -0.33
CX3CL1P78423 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 NARF-206ENST00000457415 1668 ntTSL 5 BASIC13.02□□□□□ -0.33
CX3CL1P78423 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CX3CL1P78423 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC13.01□□□□□ -0.33
CX3CL1P78423 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
CX3CL1P78423 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC13.01□□□□□ -0.33
CX3CL1P78423 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.01□□□□□ -0.33
CX3CL1P78423 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CX3CL1P78423 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.01□□□□□ -0.33
CX3CL1P78423 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 RN7SL589P-201ENST00000481268 310 ntBASIC13.01□□□□□ -0.33
CX3CL1P78423 ALG1L5P-201ENST00000482043 771 ntBASIC13.01□□□□□ -0.33
CX3CL1P78423 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.01□□□□□ -0.33
CX3CL1P78423 PRYP6-201ENST00000514804 343 ntBASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms