Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.27■□□□□ 0.04
LIM2P55344 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.27■□□□□ 0.04
LIM2P55344 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LIM2P55344 AC069262.1-201ENST00000539058 672 ntBASIC15.27■□□□□ 0.04
LIM2P55344 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.27■□□□□ 0.04
LIM2P55344 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.27■□□□□ 0.04
LIM2P55344 MIR4453-201ENST00000584019 89 ntBASIC15.27■□□□□ 0.04
LIM2P55344 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.27■□□□□ 0.04
LIM2P55344 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.27■□□□□ 0.04
LIM2P55344 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.27■□□□□ 0.04
LIM2P55344 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.27■□□□□ 0.04
LIM2P55344 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIM2P55344 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIM2P55344 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.27■□□□□ 0.03
LIM2P55344 AC092384.3-202ENST00000564646 2873 ntBASIC15.27■□□□□ 0.03
LIM2P55344 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LIM2P55344 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.27■□□□□ 0.03
LIM2P55344 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIM2P55344 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
LIM2P55344 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIM2P55344 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LIM2P55344 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIM2P55344 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIM2P55344 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIM2P55344 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.27■□□□□ 0.03
LIM2P55344 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.27■□□□□ 0.03
LIM2P55344 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIM2P55344 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.27■□□□□ 0.03
LIM2P55344 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.26■□□□□ 0.03
LIM2P55344 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.26■□□□□ 0.03
LIM2P55344 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.26■□□□□ 0.03
LIM2P55344 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.26■□□□□ 0.03
LIM2P55344 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.26■□□□□ 0.03
LIM2P55344 CDC14C-201ENST00000428251 1719 ntBASIC15.26■□□□□ 0.03
LIM2P55344 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LIM2P55344 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
LIM2P55344 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LIM2P55344 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.26■□□□□ 0.03
LIM2P55344 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.26■□□□□ 0.03
LIM2P55344 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.26■□□□□ 0.03
LIM2P55344 METTL21AP1-201ENST00000438852 635 ntBASIC15.26■□□□□ 0.03
LIM2P55344 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.26■□□□□ 0.03
LIM2P55344 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.26■□□□□ 0.03
LIM2P55344 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.26■□□□□ 0.03
LIM2P55344 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LIM2P55344 AC025678.2-201ENST00000562061 970 ntBASIC15.26■□□□□ 0.03
LIM2P55344 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.26■□□□□ 0.03
LIM2P55344 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.26■□□□□ 0.03
LIM2P55344 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.26■□□□□ 0.03
LIM2P55344 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 AC026979.3-201ENST00000607315 403 ntBASIC15.26■□□□□ 0.03
LIM2P55344 AC007967.4-201ENST00000614700 386 ntBASIC15.26■□□□□ 0.03
LIM2P55344 Z92544.3-201ENST00000624747 417 ntBASIC15.26■□□□□ 0.03
LIM2P55344 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.26■□□□□ 0.03
LIM2P55344 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.26■□□□□ 0.03
LIM2P55344 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.26■□□□□ 0.03
LIM2P55344 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.26■□□□□ 0.03
LIM2P55344 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.26■□□□□ 0.03
LIM2P55344 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
LIM2P55344 AC069224.1-201ENST00000566372 1715 ntBASIC15.26■□□□□ 0.03
LIM2P55344 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIM2P55344 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.26■□□□□ 0.03
LIM2P55344 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIM2P55344 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIM2P55344 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIM2P55344 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LIM2P55344 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
LIM2P55344 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.25■□□□□ 0.03
LIM2P55344 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIM2P55344 LINC02447-202ENST00000501888 2146 ntBASIC15.25■□□□□ 0.03
LIM2P55344 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.25■□□□□ 0.03
LIM2P55344 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIM2P55344 AC112504.1-201ENST00000623415 1841 ntBASIC15.25■□□□□ 0.03
LIM2P55344 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.25■□□□□ 0.03
LIM2P55344 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms