Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.76■□□□□ 0.27
CDH6P55285 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.76■□□□□ 0.27
CDH6P55285 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
CDH6P55285 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CDH6P55285 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CDH6P55285 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
CDH6P55285 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.75■□□□□ 0.27
CDH6P55285 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
CDH6P55285 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 FAM220BP-201ENST00000377689 816 ntBASIC16.75■□□□□ 0.27
CDH6P55285 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.75■□□□□ 0.27
CDH6P55285 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.75■□□□□ 0.27
CDH6P55285 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.75■□□□□ 0.27
CDH6P55285 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.75■□□□□ 0.27
CDH6P55285 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.75■□□□□ 0.27
CDH6P55285 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.75■□□□□ 0.27
CDH6P55285 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.75■□□□□ 0.27
CDH6P55285 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.75■□□□□ 0.27
CDH6P55285 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CDH6P55285 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.75■□□□□ 0.27
CDH6P55285 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.75■□□□□ 0.27
CDH6P55285 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CDH6P55285 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.75■□□□□ 0.27
CDH6P55285 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.75■□□□□ 0.27
CDH6P55285 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CDH6P55285 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.75■□□□□ 0.27
CDH6P55285 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.75■□□□□ 0.27
CDH6P55285 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDH6P55285 AC011477.6-201ENST00000604980 1927 ntBASIC16.74■□□□□ 0.27
CDH6P55285 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.74■□□□□ 0.27
CDH6P55285 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
CDH6P55285 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CDH6P55285 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.74■□□□□ 0.27
CDH6P55285 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CDH6P55285 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.74■□□□□ 0.27
CDH6P55285 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.74■□□□□ 0.27
CDH6P55285 HLA-H-201ENST00000383620 1096 ntBASIC16.74■□□□□ 0.27
CDH6P55285 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.74■□□□□ 0.27
CDH6P55285 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.74■□□□□ 0.27
CDH6P55285 AC112482.1-201ENST00000492080 688 ntBASIC16.74■□□□□ 0.27
CDH6P55285 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.74■□□□□ 0.27
CDH6P55285 SLC25A39P2-201ENST00000537614 270 ntBASIC16.74■□□□□ 0.27
CDH6P55285 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.74■□□□□ 0.27
CDH6P55285 MIR4469-201ENST00000583919 79 ntBASIC16.74■□□□□ 0.27
CDH6P55285 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.74■□□□□ 0.27
CDH6P55285 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.74■□□□□ 0.27
CDH6P55285 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CDH6P55285 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 AC105339.1-204ENST00000636249 355 ntBASIC16.74■□□□□ 0.27
CDH6P55285 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.74■□□□□ 0.27
CDH6P55285 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.74■□□□□ 0.27
CDH6P55285 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CDH6P55285 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.74■□□□□ 0.27
CDH6P55285 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CDH6P55285 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
CDH6P55285 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
CDH6P55285 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
CDH6P55285 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms