Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHRNA4P43681 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.24■□□□□ 0.19
CHRNA4P43681 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CHRNA4P43681 AL139384.1-201ENST00000612143 3047 ntBASIC16.24■□□□□ 0.19
CHRNA4P43681 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHRNA4P43681 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.23■□□□□ 0.19
CHRNA4P43681 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.23■□□□□ 0.19
CHRNA4P43681 AP001282.1-201ENST00000531301 1499 ntBASIC16.23■□□□□ 0.19
CHRNA4P43681 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
CHRNA4P43681 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.23■□□□□ 0.19
CHRNA4P43681 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CHRNA4P43681 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CHRNA4P43681 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.23■□□□□ 0.19
CHRNA4P43681 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.23■□□□□ 0.19
CHRNA4P43681 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.23■□□□□ 0.19
CHRNA4P43681 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
CHRNA4P43681 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.23■□□□□ 0.19
CHRNA4P43681 BANF1P1-201ENST00000553684 263 ntBASIC16.23■□□□□ 0.19
CHRNA4P43681 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.23■□□□□ 0.19
CHRNA4P43681 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.23■□□□□ 0.19
CHRNA4P43681 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.23■□□□□ 0.19
CHRNA4P43681 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.23■□□□□ 0.19
CHRNA4P43681 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHRNA4P43681 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.23■□□□□ 0.19
CHRNA4P43681 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CHRNA4P43681 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 AL162727.3-201ENST00000635661 2787 ntBASIC16.22■□□□□ 0.19
CHRNA4P43681 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.22■□□□□ 0.19
CHRNA4P43681 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.22■□□□□ 0.19
CHRNA4P43681 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.22■□□□□ 0.19
CHRNA4P43681 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.22■□□□□ 0.19
CHRNA4P43681 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CHRNA4P43681 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
CHRNA4P43681 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.22■□□□□ 0.19
CHRNA4P43681 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.22■□□□□ 0.19
CHRNA4P43681 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CHRNA4P43681 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.22■□□□□ 0.19
CHRNA4P43681 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.22■□□□□ 0.19
CHRNA4P43681 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.22■□□□□ 0.19
CHRNA4P43681 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.22■□□□□ 0.19
CHRNA4P43681 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.22■□□□□ 0.19
CHRNA4P43681 AC018529.1-201ENST00000613063 361 ntBASIC16.22■□□□□ 0.19
CHRNA4P43681 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.22■□□□□ 0.19
CHRNA4P43681 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CHRNA4P43681 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
CHRNA4P43681 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CHRNA4P43681 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.22■□□□□ 0.19
CHRNA4P43681 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.22■□□□□ 0.19
CHRNA4P43681 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CHRNA4P43681 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHRNA4P43681 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.21■□□□□ 0.19
CHRNA4P43681 AC011477.6-201ENST00000604980 1927 ntBASIC16.21■□□□□ 0.19
CHRNA4P43681 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHRNA4P43681 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CHRNA4P43681 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CHRNA4P43681 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.21■□□□□ 0.19
CHRNA4P43681 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHRNA4P43681 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
CHRNA4P43681 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CHRNA4P43681 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHRNA4P43681 AL139400.1-201ENST00000366220 510 ntBASIC16.21■□□□□ 0.19
CHRNA4P43681 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.21■□□□□ 0.19
CHRNA4P43681 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.21■□□□□ 0.19
CHRNA4P43681 AC243562.2-201ENST00000561247 970 ntBASIC16.21■□□□□ 0.19
CHRNA4P43681 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHRNA4P43681 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.21■□□□□ 0.19
CHRNA4P43681 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.21■□□□□ 0.19
CHRNA4P43681 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.21■□□□□ 0.19
CHRNA4P43681 AC003101.2-201ENST00000612557 442 ntBASIC16.21■□□□□ 0.19
CHRNA4P43681 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.21■□□□□ 0.19
CHRNA4P43681 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.21■□□□□ 0.19
CHRNA4P43681 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.21■□□□□ 0.19
CHRNA4P43681 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHRNA4P43681 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms