Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC9P31274 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC9P31274 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC21.06■□□□□ 0.96
HOXC9P31274 AGER-206ENST00000375070 1463 ntTSL 5 BASIC21.06■□□□□ 0.96
HOXC9P31274 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC9P31274 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC9P31274 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC9P31274 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC9P31274 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC9P31274 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC21.06■□□□□ 0.96
HOXC9P31274 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
HOXC9P31274 OS9-205ENST00000413095 1660 ntTSL 2 BASIC21.05■□□□□ 0.96
HOXC9P31274 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC21.05■□□□□ 0.96
HOXC9P31274 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC9P31274 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC21.05■□□□□ 0.96
HOXC9P31274 DRD5P1-201ENST00000456605 1438 ntBASIC21.05■□□□□ 0.96
HOXC9P31274 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
HOXC9P31274 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC9P31274 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC21.05■□□□□ 0.96
HOXC9P31274 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC21.05■□□□□ 0.96
HOXC9P31274 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC9P31274 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC9P31274 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC21.05■□□□□ 0.96
HOXC9P31274 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC9P31274 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC9P31274 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC9P31274 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC9P31274 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
HOXC9P31274 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC21.05■□□□□ 0.96
HOXC9P31274 RNA5SP412-201ENST00000516234 123 ntBASIC21.05■□□□□ 0.96
HOXC9P31274 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC21.05■□□□□ 0.96
HOXC9P31274 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
HOXC9P31274 ATF5-205ENST00000600336 682 ntTSL 2 BASIC21.05■□□□□ 0.96
HOXC9P31274 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC21.05■□□□□ 0.96
HOXC9P31274 AC244669.2-201ENST00000612320 853 ntBASIC21.05■□□□□ 0.96
HOXC9P31274 METTL26-214ENST00000614890 801 ntTSL 3 BASIC21.05■□□□□ 0.96
HOXC9P31274 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC21.05■□□□□ 0.96
HOXC9P31274 CYP2AB1P-202ENST00000454440 1456 ntBASIC21.05■□□□□ 0.96
HOXC9P31274 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC9P31274 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
HOXC9P31274 TUBB1P2-201ENST00000422712 1306 ntBASIC21.04■□□□□ 0.96
HOXC9P31274 TUBB1P1-201ENST00000503144 1300 ntBASIC21.04■□□□□ 0.96
HOXC9P31274 AC134312.5-201ENST00000568031 1313 ntBASIC21.04■□□□□ 0.96
HOXC9P31274 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC9P31274 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC21.04■□□□□ 0.96
HOXC9P31274 MPV17-206ENST00000402722 827 ntTSL 3 BASIC21.04■□□□□ 0.96
HOXC9P31274 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
HOXC9P31274 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC21.04■□□□□ 0.96
HOXC9P31274 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC21.04■□□□□ 0.96
HOXC9P31274 GNRHR2-203ENST00000581100 1187 ntBASIC21.04■□□□□ 0.96
HOXC9P31274 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC21.04■□□□□ 0.96
HOXC9P31274 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC9P31274 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC9P31274 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC21.04■□□□□ 0.96
HOXC9P31274 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC21.04■□□□□ 0.96
HOXC9P31274 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC21.04■□□□□ 0.96
HOXC9P31274 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC9P31274 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC9P31274 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC21.04■□□□□ 0.96
HOXC9P31274 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
HOXC9P31274 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC9P31274 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC9P31274 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC9P31274 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
HOXC9P31274 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC21.03■□□□□ 0.96
HOXC9P31274 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC21.03■□□□□ 0.96
HOXC9P31274 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
HOXC9P31274 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC21.03■□□□□ 0.96
HOXC9P31274 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC21.03■□□□□ 0.96
HOXC9P31274 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 AL355994.2-201ENST00000447882 704 ntBASIC21.03■□□□□ 0.96
HOXC9P31274 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC21.03■□□□□ 0.96
HOXC9P31274 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC21.03■□□□□ 0.96
HOXC9P31274 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC21.03■□□□□ 0.96
HOXC9P31274 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.03■□□□□ 0.96
HOXC9P31274 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
HOXC9P31274 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC9P31274 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC9P31274 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
HOXC9P31274 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
HOXC9P31274 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC21.02■□□□□ 0.96
HOXC9P31274 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC9P31274 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC9P31274 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC21.02■□□□□ 0.96
HOXC9P31274 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms