Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A5P29400 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A5P29400 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A5P29400 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A5P29400 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A5P29400 CYP46A4P-201ENST00000414953 267 ntBASIC18.89■□□□□ 0.61
COL4A5P29400 KLF2P2-201ENST00000416807 1039 ntBASIC18.89■□□□□ 0.61
COL4A5P29400 NKAIN1P1-201ENST00000435754 582 ntBASIC18.89■□□□□ 0.61
COL4A5P29400 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
COL4A5P29400 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A5P29400 FTLP10-202ENST00000505798 471 ntBASIC18.89■□□□□ 0.61
COL4A5P29400 RERG-205ENST00000537647 935 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A5P29400 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC18.89■□□□□ 0.61
COL4A5P29400 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC18.89■□□□□ 0.61
COL4A5P29400 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
COL4A5P29400 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
COL4A5P29400 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.88■□□□□ 0.61
COL4A5P29400 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 AL354989.2-201ENST00000435838 1540 ntBASIC18.88■□□□□ 0.61
COL4A5P29400 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A5P29400 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 POM121L10P-201ENST00000436994 1285 ntBASIC18.88■□□□□ 0.61
COL4A5P29400 MPRIPP1-201ENST00000452433 1089 ntBASIC18.88■□□□□ 0.61
COL4A5P29400 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.88■□□□□ 0.61
COL4A5P29400 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A5P29400 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A5P29400 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC18.88■□□□□ 0.61
COL4A5P29400 RN7SL574P-201ENST00000581512 297 ntBASIC18.88■□□□□ 0.61
COL4A5P29400 AP001505.2-201ENST00000616815 443 ntBASIC18.88■□□□□ 0.61
COL4A5P29400 AL138799.1-201ENST00000448213 1675 ntBASIC18.88■□□□□ 0.61
COL4A5P29400 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A5P29400 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A5P29400 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A5P29400 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A5P29400 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A5P29400 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A5P29400 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A5P29400 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A5P29400 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A5P29400 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
COL4A5P29400 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A5P29400 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.87■□□□□ 0.61
COL4A5P29400 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
COL4A5P29400 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A5P29400 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A5P29400 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A5P29400 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC18.87■□□□□ 0.61
COL4A5P29400 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A5P29400 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A5P29400 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A5P29400 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A5P29400 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.87■□□□□ 0.61
COL4A5P29400 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A5P29400 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
COL4A5P29400 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
COL4A5P29400 PTPA-218ENST00000435132 618 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A5P29400 RN7SL769P-201ENST00000469386 295 ntBASIC18.86■□□□□ 0.61
COL4A5P29400 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 TMEM198B-204ENST00000484016 896 ntBASIC18.86■□□□□ 0.61
COL4A5P29400 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A5P29400 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A5P29400 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC18.86■□□□□ 0.61
COL4A5P29400 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A5P29400 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC18.86■□□□□ 0.61
COL4A5P29400 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL4A5P29400 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL4A5P29400 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A5P29400 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL4A5P29400 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A5P29400 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A5P29400 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A5P29400 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A5P29400 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A5P29400 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A5P29400 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
COL4A5P29400 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
COL4A5P29400 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A5P29400 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms