Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGA1P17096 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
HMGA1P17096 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.53■□□□□ 0.24
HMGA1P17096 AC007389.4-201ENST00000454674 793 ntBASIC16.53■□□□□ 0.24
HMGA1P17096 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGA1P17096 ACA64.2-201ENST00000459014 129 ntBASIC16.53■□□□□ 0.24
HMGA1P17096 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGA1P17096 IGHV3-71-201ENST00000523324 359 ntBASIC16.53■□□□□ 0.24
HMGA1P17096 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGA1P17096 KRT17P8-201ENST00000540749 863 ntBASIC16.53■□□□□ 0.24
HMGA1P17096 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGA1P17096 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HMGA1P17096 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGA1P17096 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGA1P17096 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGA1P17096 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGA1P17096 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HMGA1P17096 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.53■□□□□ 0.24
HMGA1P17096 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGA1P17096 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HMGA1P17096 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.53■□□□□ 0.24
HMGA1P17096 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGA1P17096 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGA1P17096 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGA1P17096 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
HMGA1P17096 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.52■□□□□ 0.24
HMGA1P17096 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGA1P17096 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGA1P17096 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.52■□□□□ 0.24
HMGA1P17096 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
HMGA1P17096 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.52■□□□□ 0.24
HMGA1P17096 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGA1P17096 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.52■□□□□ 0.24
HMGA1P17096 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.52■□□□□ 0.24
HMGA1P17096 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HMGA1P17096 AC010319.3-201ENST00000597028 470 ntBASIC16.52■□□□□ 0.24
HMGA1P17096 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.52■□□□□ 0.24
HMGA1P17096 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.52■□□□□ 0.24
HMGA1P17096 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGA1P17096 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HMGA1P17096 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
HMGA1P17096 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.52■□□□□ 0.23
HMGA1P17096 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGA1P17096 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HMGA1P17096 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HMGA1P17096 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.52■□□□□ 0.23
HMGA1P17096 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGA1P17096 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGA1P17096 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
HMGA1P17096 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGA1P17096 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HMGA1P17096 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGA1P17096 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGA1P17096 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HMGA1P17096 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
HMGA1P17096 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGA1P17096 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGA1P17096 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGA1P17096 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.51■□□□□ 0.23
HMGA1P17096 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.51■□□□□ 0.23
HMGA1P17096 AL359711.2-201ENST00000563105 872 ntBASIC16.51■□□□□ 0.23
HMGA1P17096 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGA1P17096 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGA1P17096 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGA1P17096 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGA1P17096 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGA1P17096 AC008735.3-201ENST00000596646 500 ntBASIC16.51■□□□□ 0.23
HMGA1P17096 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.51■□□□□ 0.23
HMGA1P17096 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGA1P17096 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 AC020916.1-201ENST00000587762 1774 ntBASIC16.51■□□□□ 0.23
HMGA1P17096 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms