Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VCANP13611 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.31■□□□□ 0.2
VCANP13611 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 PDIA3P2-201ENST00000428073 158 ntBASIC16.3■□□□□ 0.2
VCANP13611 AC053503.3-201ENST00000448375 114 ntBASIC16.3■□□□□ 0.2
VCANP13611 POU5F1P6-201ENST00000466990 990 ntBASIC16.3■□□□□ 0.2
VCANP13611 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.3■□□□□ 0.2
VCANP13611 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.3■□□□□ 0.2
VCANP13611 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.3■□□□□ 0.2
VCANP13611 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.3■□□□□ 0.2
VCANP13611 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.3■□□□□ 0.2
VCANP13611 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC16.3■□□□□ 0.2
VCANP13611 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC16.3■□□□□ 0.2
VCANP13611 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC16.3■□□□□ 0.2
VCANP13611 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.3■□□□□ 0.2
VCANP13611 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.3■□□□□ 0.2
VCANP13611 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.3■□□□□ 0.2
VCANP13611 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.3■□□□□ 0.2
VCANP13611 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.3■□□□□ 0.2
VCANP13611 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
VCANP13611 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.3■□□□□ 0.2
VCANP13611 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VCANP13611 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
VCANP13611 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VCANP13611 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.3■□□□□ 0.2
VCANP13611 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
VCANP13611 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC16.29■□□□□ 0.2
VCANP13611 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VCANP13611 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.29■□□□□ 0.2
VCANP13611 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.29■□□□□ 0.2
VCANP13611 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
VCANP13611 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VCANP13611 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.29■□□□□ 0.2
VCANP13611 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VCANP13611 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.29■□□□□ 0.2
VCANP13611 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
VCANP13611 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC16.29■□□□□ 0.2
VCANP13611 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC16.29■□□□□ 0.2
VCANP13611 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.29■□□□□ 0.2
VCANP13611 AL354989.2-201ENST00000435838 1540 ntBASIC16.29■□□□□ 0.2
VCANP13611 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.29■□□□□ 0.2
VCANP13611 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 TOMM22P5-201ENST00000416399 439 ntBASIC16.29■□□□□ 0.2
VCANP13611 TARDBPP1-201ENST00000442013 1203 ntBASIC16.29■□□□□ 0.2
VCANP13611 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VCANP13611 AC242376.1-201ENST00000559033 726 ntBASIC16.29■□□□□ 0.2
VCANP13611 C2orf69P1-201ENST00000563532 1093 ntBASIC16.29■□□□□ 0.2
VCANP13611 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.29■□□□□ 0.2
VCANP13611 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VCANP13611 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VCANP13611 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.28■□□□□ 0.2
VCANP13611 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.28■□□□□ 0.2
VCANP13611 AC007663.3-201ENST00000609632 465 ntBASIC16.28■□□□□ 0.2
VCANP13611 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.28■□□□□ 0.2
VCANP13611 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.28■□□□□ 0.2
VCANP13611 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 AC068880.1-201ENST00000507289 2297 ntBASIC16.28■□□□□ 0.2
VCANP13611 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.28■□□□□ 0.2
VCANP13611 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VCANP13611 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.28■□□□□ 0.2
VCANP13611 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC16.28■□□□□ 0.2
VCANP13611 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCANP13611 PTPN20CP-201ENST00000614090 920 ntBASIC16.28■□□□□ 0.2
VCANP13611 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.28■□□□□ 0.2
VCANP13611 AL645728.2-202ENST00000641679 227 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms