Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.24■□□□□ 0.19
VIMP08670 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.24■□□□□ 0.19
VIMP08670 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VIMP08670 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.24■□□□□ 0.19
VIMP08670 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
VIMP08670 VENTXP7-201ENST00000475503 772 ntBASIC16.24■□□□□ 0.19
VIMP08670 AC091607.1-201ENST00000490318 1060 ntBASIC16.24■□□□□ 0.19
VIMP08670 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.24■□□□□ 0.19
VIMP08670 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.24■□□□□ 0.19
VIMP08670 CYP2A7P1-201ENST00000595391 815 ntBASIC16.24■□□□□ 0.19
VIMP08670 AC133561.5-201ENST00000635547 218 ntBASIC16.24■□□□□ 0.19
VIMP08670 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.24■□□□□ 0.19
VIMP08670 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
VIMP08670 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
VIMP08670 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.24■□□□□ 0.19
VIMP08670 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.24■□□□□ 0.19
VIMP08670 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
VIMP08670 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.24■□□□□ 0.19
VIMP08670 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.24■□□□□ 0.19
VIMP08670 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
VIMP08670 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.23■□□□□ 0.19
VIMP08670 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.23■□□□□ 0.19
VIMP08670 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VIMP08670 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
VIMP08670 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
VIMP08670 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VIMP08670 PTENP1-202ENST00000532280 3996 ntBASIC16.23■□□□□ 0.19
VIMP08670 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.23■□□□□ 0.19
VIMP08670 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.23■□□□□ 0.19
VIMP08670 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.23■□□□□ 0.19
VIMP08670 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.23■□□□□ 0.19
VIMP08670 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.23■□□□□ 0.19
VIMP08670 AL353135.1-201ENST00000606729 504 ntBASIC16.23■□□□□ 0.19
VIMP08670 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.23■□□□□ 0.19
VIMP08670 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.23■□□□□ 0.19
VIMP08670 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.23■□□□□ 0.19
VIMP08670 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
VIMP08670 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
VIMP08670 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
VIMP08670 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
VIMP08670 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VIMP08670 AC013726.1-201ENST00000563747 2285 ntBASIC16.22■□□□□ 0.19
VIMP08670 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VIMP08670 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.22■□□□□ 0.19
VIMP08670 AC105250.1-201ENST00000509378 2057 ntBASIC16.22■□□□□ 0.19
VIMP08670 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VIMP08670 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.22■□□□□ 0.19
VIMP08670 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.22■□□□□ 0.19
VIMP08670 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
VIMP08670 SPDYE13P-201ENST00000445314 798 ntBASIC16.22■□□□□ 0.19
VIMP08670 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
VIMP08670 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.22■□□□□ 0.19
VIMP08670 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.22■□□□□ 0.19
VIMP08670 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.22■□□□□ 0.19
VIMP08670 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
VIMP08670 AC091167.2-201ENST00000579581 588 ntBASIC16.22■□□□□ 0.19
VIMP08670 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VIMP08670 AP000867.4-201ENST00000641616 219 ntBASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms