Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
LDLRP01130 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LDLRP01130 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
LDLRP01130 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.64■□□□□ 0.09
LDLRP01130 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
LDLRP01130 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC15.64■□□□□ 0.09
LDLRP01130 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
LDLRP01130 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.64■□□□□ 0.09
LDLRP01130 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.64■□□□□ 0.09
LDLRP01130 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 AP002414.1-201ENST00000391405 1147 ntBASIC15.64■□□□□ 0.09
LDLRP01130 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
LDLRP01130 ACTG1P4-201ENST00000425123 1122 ntBASIC15.64■□□□□ 0.09
LDLRP01130 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.64■□□□□ 0.09
LDLRP01130 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
LDLRP01130 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
LDLRP01130 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.64■□□□□ 0.09
LDLRP01130 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.64■□□□□ 0.09
LDLRP01130 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.64■□□□□ 0.09
LDLRP01130 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.64■□□□□ 0.09
LDLRP01130 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.64■□□□□ 0.09
LDLRP01130 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.64■□□□□ 0.09
LDLRP01130 AC008667.4-201ENST00000607370 168 ntBASIC15.64■□□□□ 0.09
LDLRP01130 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
LDLRP01130 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
LDLRP01130 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
LDLRP01130 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.64■□□□□ 0.09
LDLRP01130 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 AC097637.2-201ENST00000624096 1997 ntBASIC15.64■□□□□ 0.09
LDLRP01130 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LDLRP01130 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.63■□□□□ 0.09
LDLRP01130 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
LDLRP01130 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
LDLRP01130 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.63■□□□□ 0.09
LDLRP01130 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LDLRP01130 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.63■□□□□ 0.09
LDLRP01130 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LDLRP01130 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
LDLRP01130 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
LDLRP01130 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LDLRP01130 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.63■□□□□ 0.09
LDLRP01130 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC15.63■□□□□ 0.09
LDLRP01130 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.63■□□□□ 0.09
LDLRP01130 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 PUDP-206ENST00000540122 825 ntTSL 2 BASIC15.63■□□□□ 0.09
LDLRP01130 AC190387.1-201ENST00000551683 408 ntBASIC15.63■□□□□ 0.09
LDLRP01130 MIR4745-201ENST00000577608 62 ntBASIC15.63■□□□□ 0.09
LDLRP01130 AC004835.2-201ENST00000603762 682 ntBASIC15.63■□□□□ 0.09
LDLRP01130 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
LDLRP01130 AC004790.2-201ENST00000623588 572 ntBASIC15.63■□□□□ 0.09
LDLRP01130 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.63■□□□□ 0.09
LDLRP01130 AC073592.5-201ENST00000624854 528 ntBASIC15.63■□□□□ 0.09
LDLRP01130 LINC02228-204ENST00000642115 2962 ntBASIC15.63■□□□□ 0.09
LDLRP01130 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
LDLRP01130 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LDLRP01130 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.63■□□□□ 0.09
LDLRP01130 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.63■□□□□ 0.09
LDLRP01130 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.63■□□□□ 0.09
LDLRP01130 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
LDLRP01130 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
LDLRP01130 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
LDLRP01130 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LDLRP01130 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.62■□□□□ 0.09
LDLRP01130 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.62■□□□□ 0.09
LDLRP01130 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 PRAL-201ENST00000624952 3286 ntBASIC15.62■□□□□ 0.09
LDLRP01130 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms