Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CUX2O14529 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CUX2O14529 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC26.91■■□□□ 1.9
CUX2O14529 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC26.91■■□□□ 1.9
CUX2O14529 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
CUX2O14529 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC26.9■■□□□ 1.9
CUX2O14529 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
CUX2O14529 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC26.9■■□□□ 1.9
CUX2O14529 AMT-206ENST00000458307 1860 ntTSL 2 BASIC26.9■■□□□ 1.9
CUX2O14529 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC26.9■■□□□ 1.9
CUX2O14529 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC26.9■■□□□ 1.9
CUX2O14529 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CUX2O14529 SLC16A6P1-201ENST00000413214 1059 ntBASIC26.9■■□□□ 1.9
CUX2O14529 SLED1-202ENST00000512051 380 ntBASIC26.9■■□□□ 1.9
CUX2O14529 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC26.9■■□□□ 1.9
CUX2O14529 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC26.9■■□□□ 1.9
CUX2O14529 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC26.9■■□□□ 1.9
CUX2O14529 AC051619.9-201ENST00000623237 597 ntBASIC26.9■■□□□ 1.9
CUX2O14529 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CUX2O14529 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC26.9■■□□□ 1.9
CUX2O14529 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CUX2O14529 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.9
CUX2O14529 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CUX2O14529 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC26.89■■□□□ 1.9
CUX2O14529 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CUX2O14529 DPM3-202ENST00000368399 517 ntBASIC26.89■■□□□ 1.9
CUX2O14529 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CUX2O14529 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC26.89■■□□□ 1.9
CUX2O14529 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC26.89■■□□□ 1.9
CUX2O14529 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
CUX2O14529 MIR6842-201ENST00000612539 65 ntBASIC26.89■■□□□ 1.9
CUX2O14529 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC26.89■■□□□ 1.9
CUX2O14529 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CUX2O14529 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC26.89■■□□□ 1.89
CUX2O14529 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CUX2O14529 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
CUX2O14529 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.89
CUX2O14529 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CUX2O14529 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.89
CUX2O14529 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CUX2O14529 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC26.89■■□□□ 1.89
CUX2O14529 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CUX2O14529 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CUX2O14529 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CUX2O14529 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CUX2O14529 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CUX2O14529 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CUX2O14529 KRT8P35-201ENST00000483942 1338 ntBASIC26.88■■□□□ 1.89
CUX2O14529 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC26.88■■□□□ 1.89
CUX2O14529 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
CUX2O14529 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC26.88■■□□□ 1.89
CUX2O14529 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC26.88■■□□□ 1.89
CUX2O14529 AL354877.1-201ENST00000424412 413 ntBASIC26.88■■□□□ 1.89
CUX2O14529 RBM8B-201ENST00000555532 525 ntBASIC26.88■■□□□ 1.89
CUX2O14529 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC26.88■■□□□ 1.89
CUX2O14529 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC26.88■■□□□ 1.89
CUX2O14529 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC26.88■■□□□ 1.89
CUX2O14529 ETV2-207ENST00000619399 994 ntTSL 5 BASIC26.88■■□□□ 1.89
CUX2O14529 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CUX2O14529 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CUX2O14529 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CUX2O14529 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC26.88■■□□□ 1.89
CUX2O14529 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
CUX2O14529 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CUX2O14529 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 AP001582.1-201ENST00000525856 295 ntBASIC26.87■■□□□ 1.89
CUX2O14529 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC26.87■■□□□ 1.89
CUX2O14529 AL805961.1-203ENST00000641078 1258 ntBASIC26.87■■□□□ 1.89
CUX2O14529 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC26.87■■□□□ 1.89
CUX2O14529 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC26.87■■□□□ 1.89
CUX2O14529 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
CUX2O14529 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC26.87■■□□□ 1.89
CUX2O14529 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 RPL7P35-201ENST00000446943 740 ntBASIC26.87■■□□□ 1.89
CUX2O14529 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC26.87■■□□□ 1.89
CUX2O14529 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
CUX2O14529 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC26.87■■□□□ 1.89
CUX2O14529 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC26.87■■□□□ 1.89
CUX2O14529 MIR4754-201ENST00000582477 89 ntBASIC26.87■■□□□ 1.89
CUX2O14529 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC26.87■■□□□ 1.89
CUX2O14529 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC26.86■■□□□ 1.89
CUX2O14529 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
CUX2O14529 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
CUX2O14529 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC26.86■■□□□ 1.89
CUX2O14529 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
CUX2O14529 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
CUX2O14529 DRD5P1-201ENST00000456605 1438 ntBASIC26.86■■□□□ 1.89
CUX2O14529 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
CUX2O14529 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC26.86■■□□□ 1.89
CUX2O14529 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms