Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS9D1Q9Y2B5 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 MIR346-201ENST00000362234 95 ntBASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 HLA-H-201ENST00000383620 1096 ntBASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 GPX1P2-201ENST00000429271 606 ntBASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 IMMP2L-204ENST00000447215 1164 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 AC108718.1-201ENST00000482382 554 ntTSL 4 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 AC079140.1-201ENST00000508039 487 ntBASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 AC243562.1-201ENST00000560672 389 ntBASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 AL132657.2-201ENST00000564417 358 ntBASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 AC061975.2-201ENST00000581722 295 ntBASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 AC022148.2-201ENST00000586176 560 ntBASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS9D1Q9Y2B5 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 SSR1P1-201ENST00000407630 814 ntBASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 AC104629.1-201ENST00000494226 508 ntBASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 RNA5SP410-201ENST00000516285 106 ntBASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 AP000842.3-202ENST00000569238 1080 ntBASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 156.2 ms