Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 AC243562.2-201ENST00000561247 970 ntBASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 AC099522.2-201ENST00000607001 744 ntBASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 AC018892.3-201ENST00000623986 2499 ntBASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.59■□□□□ 0.41
LIMA1Q9UHB6 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.58■□□□□ 0.41
LIMA1Q9UHB6 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMA1Q9UHB6 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
LIMA1Q9UHB6 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMA1Q9UHB6 ZBTB45P2-201ENST00000452245 1531 ntBASIC17.58■□□□□ 0.41
LIMA1Q9UHB6 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
LIMA1Q9UHB6 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LIMA1Q9UHB6 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMA1Q9UHB6 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMA1Q9UHB6 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.58■□□□□ 0.41
LIMA1Q9UHB6 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.58■□□□□ 0.41
LIMA1Q9UHB6 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC17.58■□□□□ 0.41
LIMA1Q9UHB6 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 AC074386.1-202ENST00000463561 864 ntBASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 SPTSSB-204ENST00000617024 1292 ntBASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
LIMA1Q9UHB6 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 AC104109.2-201ENST00000602919 1418 ntBASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 AC002056.1-201ENST00000395613 760 ntBASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 PDPK2P-202ENST00000562415 1191 ntBASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms