Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 AC074044.1-201ENST00000609673 707 ntBASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 AC004461.2-201ENST00000629517 803 ntBASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 NKILA-202ENST00000614771 2598 ntBASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.29□□□□□ -0.12
CLCF1Q9UBD9 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 KRT8P37-201ENST00000451609 1420 ntBASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 DOC2GP-202ENST00000514950 1163 ntBASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 AC027307.3-201ENST00000594262 1100 ntBASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLCF1Q9UBD9 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLCF1Q9UBD9 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
CLCF1Q9UBD9 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CLCF1Q9UBD9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
CLCF1Q9UBD9 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.27□□□□□ -0.12
CLCF1Q9UBD9 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLCF1Q9UBD9 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLCF1Q9UBD9 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.27□□□□□ -0.12
CLCF1Q9UBD9 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms