Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CISHQ9NSE2 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CISHQ9NSE2 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CISHQ9NSE2 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.14■□□□□ 0.33
CISHQ9NSE2 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CISHQ9NSE2 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.14■□□□□ 0.33
CISHQ9NSE2 AP003680.1-201ENST00000598970 3660 ntBASIC17.14■□□□□ 0.33
CISHQ9NSE2 LRRFIP1P1-201ENST00000498774 2246 ntBASIC17.13■□□□□ 0.33
CISHQ9NSE2 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 REXO1L1P-202ENST00000608646 1974 ntBASIC17.13■□□□□ 0.33
CISHQ9NSE2 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 AC107890.1-201ENST00000422478 521 ntBASIC17.13■□□□□ 0.33
CISHQ9NSE2 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 AL645939.2-201ENST00000427340 991 ntBASIC17.13■□□□□ 0.33
CISHQ9NSE2 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 EEF1DP4-201ENST00000446006 880 ntBASIC17.13■□□□□ 0.33
CISHQ9NSE2 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 AL079307.3-201ENST00000556114 283 ntBASIC17.13■□□□□ 0.33
CISHQ9NSE2 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 AL589739.1-201ENST00000607720 493 ntBASIC17.13■□□□□ 0.33
CISHQ9NSE2 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.13■□□□□ 0.33
CISHQ9NSE2 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 AC007950.2-201ENST00000615045 2347 ntBASIC17.13■□□□□ 0.33
CISHQ9NSE2 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.13■□□□□ 0.33
CISHQ9NSE2 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CISHQ9NSE2 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 AC140878.1-201ENST00000565277 250 ntBASIC17.12■□□□□ 0.33
CISHQ9NSE2 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 AC018892.3-201ENST00000623986 2499 ntBASIC17.12■□□□□ 0.33
CISHQ9NSE2 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 CETN4P-206ENST00000642099 2168 ntBASIC17.12■□□□□ 0.33
CISHQ9NSE2 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.12■□□□□ 0.33
CISHQ9NSE2 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CISHQ9NSE2 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.11■□□□□ 0.33
CISHQ9NSE2 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 865 ms