Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 GIMAP3P-201ENST00000495150 836 ntBASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 CHCHD2P3-201ENST00000603038 451 ntBASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 MIR6752-201ENST00000618442 71 ntBASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 AL033527.5-202ENST00000641632 1098 ntBASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 AC092171.3-201ENST00000610122 2651 ntBASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TM9SF3Q9HD45 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 SPDYE17-201ENST00000412399 783 ntBASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 AC114501.2-201ENST00000439631 535 ntBASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 GPR53P-205ENST00000457298 1084 ntBASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 RN7SL752P-201ENST00000463779 287 ntBASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 AC008494.3-201ENST00000606615 944 ntBASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 IGHV3-72-202ENST00000621503 303 ntBASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TM9SF3Q9HD45 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 AL031731.1-201ENST00000642131 2094 ntBASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TM9SF3Q9HD45 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms