Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 AL009183.1-201ENST00000603760 355 ntBASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 GPALPP1-207ENST00000611650 899 ntBASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 AC025580.3-201ENST00000617932 1424 ntBASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 AC016027.1-202ENST00000607927 1699 ntBASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 PMS2P4-201ENST00000412466 1052 ntBASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 AC093909.1-201ENST00000504731 1122 ntBASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 MIR3909-201ENST00000579518 119 ntBASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRIM56Q9BRZ2 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 IL9RP2-201ENST00000423948 1312 ntBASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 AC013268.4-201ENST00000637413 2228 ntBASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 AC093724.1-201ENST00000448659 1027 ntBASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 AC064836.3-201ENST00000607928 673 ntBASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
TRIM56Q9BRZ2 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms