Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.12■□□□□ 0.17
CPNE1Q99829 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CPNE1Q99829 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.12■□□□□ 0.17
CPNE1Q99829 HLA-A-201ENST00000376802 1334 ntBASIC16.12■□□□□ 0.17
CPNE1Q99829 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.12■□□□□ 0.17
CPNE1Q99829 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CPNE1Q99829 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CPNE1Q99829 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CPNE1Q99829 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CPNE1Q99829 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CPNE1Q99829 AC087481.3-201ENST00000602886 1894 ntBASIC16.12■□□□□ 0.17
CPNE1Q99829 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CPNE1Q99829 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.11■□□□□ 0.17
CPNE1Q99829 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.11■□□□□ 0.17
CPNE1Q99829 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CPNE1Q99829 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 AC002056.1-201ENST00000395613 760 ntBASIC16.11■□□□□ 0.17
CPNE1Q99829 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CPNE1Q99829 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.11■□□□□ 0.17
CPNE1Q99829 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.11■□□□□ 0.17
CPNE1Q99829 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CPNE1Q99829 AC034105.1-201ENST00000563488 319 ntBASIC16.11■□□□□ 0.17
CPNE1Q99829 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.11■□□□□ 0.17
CPNE1Q99829 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CPNE1Q99829 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.11■□□□□ 0.17
CPNE1Q99829 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.11■□□□□ 0.17
CPNE1Q99829 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.11■□□□□ 0.17
CPNE1Q99829 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.11■□□□□ 0.17
CPNE1Q99829 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.11■□□□□ 0.17
CPNE1Q99829 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.11■□□□□ 0.17
CPNE1Q99829 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.11■□□□□ 0.17
CPNE1Q99829 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.11■□□□□ 0.17
CPNE1Q99829 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 AC104109.2-201ENST00000602919 1418 ntBASIC16.11■□□□□ 0.17
CPNE1Q99829 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CPNE1Q99829 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CPNE1Q99829 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
CPNE1Q99829 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CPNE1Q99829 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
CPNE1Q99829 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CPNE1Q99829 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.1■□□□□ 0.17
CPNE1Q99829 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CPNE1Q99829 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.1■□□□□ 0.17
CPNE1Q99829 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.1■□□□□ 0.17
CPNE1Q99829 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CPNE1Q99829 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.1■□□□□ 0.17
CPNE1Q99829 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.1■□□□□ 0.17
CPNE1Q99829 KRT126P-201ENST00000549467 1181 ntBASIC16.1■□□□□ 0.17
CPNE1Q99829 AC073389.1-201ENST00000595595 795 ntBASIC16.1■□□□□ 0.17
CPNE1Q99829 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.1■□□□□ 0.17
CPNE1Q99829 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.1■□□□□ 0.17
CPNE1Q99829 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.1■□□□□ 0.17
CPNE1Q99829 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.1■□□□□ 0.17
CPNE1Q99829 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CPNE1Q99829 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.1■□□□□ 0.17
CPNE1Q99829 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.1■□□□□ 0.17
CPNE1Q99829 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.1■□□□□ 0.17
CPNE1Q99829 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CPNE1Q99829 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CPNE1Q99829 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CPNE1Q99829 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.09■□□□□ 0.17
CPNE1Q99829 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
CPNE1Q99829 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CPNE1Q99829 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CPNE1Q99829 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CPNE1Q99829 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms