Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 AL355385.1-201ENST00000606123 409 ntBASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 RN7SL828P-201ENST00000607615 303 ntBASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTCHD1Q96NR3 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTCHD1Q96NR3 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.21■□□□□ 0.02
PTCHD1Q96NR3 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
PTCHD1Q96NR3 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.21■□□□□ 0.02
PTCHD1Q96NR3 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
PTCHD1Q96NR3 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTCHD1Q96NR3 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
PTCHD1Q96NR3 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 TREML5P-201ENST00000421694 576 ntBASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 IGHV3-42-201ENST00000520410 361 ntBASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTCHD1Q96NR3 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 MIR770-201ENST00000390219 98 ntBASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 AC055876.3-201ENST00000431496 288 ntBASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 AL139010.1-201ENST00000454878 894 ntBASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.19■□□□□ 0.02
PTCHD1Q96NR3 AC138649.4-201ENST00000612222 287 ntBASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms