Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 AC092474.2-201ENST00000424288 719 ntBASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 AC140658.5-201ENST00000438532 169 ntBASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 KRT19P2-202ENST00000557173 1012 ntBASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CLHC1Q8NHS4 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 AC013268.4-201ENST00000637413 2228 ntBASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 CICP13-201ENST00000422015 2789 ntBASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLHC1Q8NHS4 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 HAUS4P1-201ENST00000406739 1145 ntBASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLHC1Q8NHS4 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.5■□□□□ 0.07
CLHC1Q8NHS4 TPM4P1-201ENST00000436100 807 ntBASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms