Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 AP000842.3-202ENST00000569238 1080 ntBASIC14.32□□□□□ -0.12
SKA3Q8IX90 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 SPTSSB-204ENST00000617024 1292 ntBASIC14.32□□□□□ -0.12
SKA3Q8IX90 AC134684.3-201ENST00000641758 218 ntBASIC14.32□□□□□ -0.12
SKA3Q8IX90 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.31□□□□□ -0.12
SKA3Q8IX90 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 AC132872.4-202ENST00000622924 2756 ntBASIC14.31□□□□□ -0.12
SKA3Q8IX90 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 MIR1233-2-201ENST00000408138 82 ntBASIC14.31□□□□□ -0.12
SKA3Q8IX90 MIR1233-1-201ENST00000408722 82 ntBASIC14.31□□□□□ -0.12
SKA3Q8IX90 AC142381.1-201ENST00000426099 345 ntBASIC14.31□□□□□ -0.12
SKA3Q8IX90 AC005237.2-201ENST00000434368 219 ntBASIC14.31□□□□□ -0.12
SKA3Q8IX90 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 AC098859.1-201ENST00000502915 1238 ntBASIC14.31□□□□□ -0.12
SKA3Q8IX90 AP000344.2-201ENST00000512987 629 ntBASIC14.31□□□□□ -0.12
SKA3Q8IX90 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SKA3Q8IX90 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.31□□□□□ -0.12
SKA3Q8IX90 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms