Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 AL355994.2-201ENST00000447882 704 ntBASIC15.51■□□□□ 0.07
COL28A1Q2UY09 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.51■□□□□ 0.07
COL28A1Q2UY09 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 RN7SL828P-201ENST00000607615 303 ntBASIC15.51■□□□□ 0.07
COL28A1Q2UY09 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 PPA1-206ENST00000625364 644 ntTSL 5 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
COL28A1Q2UY09 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 TUBB8P12-201ENST00000308911 1335 ntBASIC15.5■□□□□ 0.07
COL28A1Q2UY09 TUBB7P-202ENST00000428444 1305 ntBASIC15.5■□□□□ 0.07
COL28A1Q2UY09 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 TUBB8P7-204ENST00000567960 1332 ntBASIC15.5■□□□□ 0.07
COL28A1Q2UY09 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 ELK1P1-201ENST00000485699 580 ntBASIC15.5■□□□□ 0.07
COL28A1Q2UY09 SPDYE18-201ENST00000510091 1050 ntBASIC15.5■□□□□ 0.07
COL28A1Q2UY09 RNA5SP423-201ENST00000517127 109 ntBASIC15.5■□□□□ 0.07
COL28A1Q2UY09 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 COG4-212ENST00000564653 590 ntTSL 5 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 AC005915.1-201ENST00000624912 2018 ntBASIC15.5■□□□□ 0.07
COL28A1Q2UY09 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL28A1Q2UY09 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.49■□□□□ 0.07
COL28A1Q2UY09 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL28A1Q2UY09 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms