Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 AC098614.1-201ENST00000368528 745 ntBASIC17.27■□□□□ 0.36
VCPP55072 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.27■□□□□ 0.36
VCPP55072 AC112492.5-201ENST00000421897 457 ntBASIC17.27■□□□□ 0.36
VCPP55072 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.27■□□□□ 0.36
VCPP55072 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC17.27■□□□□ 0.36
VCPP55072 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 AC109635.5-201ENST00000533593 962 ntBASIC17.27■□□□□ 0.36
VCPP55072 API5-211ENST00000534695 560 ntTSL 5 BASIC17.27■□□□□ 0.36
VCPP55072 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.27■□□□□ 0.36
VCPP55072 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.27■□□□□ 0.36
VCPP55072 AC140912.1-201ENST00000577171 1054 ntBASIC17.27■□□□□ 0.36
VCPP55072 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.27■□□□□ 0.36
VCPP55072 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.27■□□□□ 0.36
VCPP55072 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.27■□□□□ 0.36
VCPP55072 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.27■□□□□ 0.36
VCPP55072 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 SPDYE12P-201ENST00000618416 771 ntBASIC17.27■□□□□ 0.36
VCPP55072 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.27■□□□□ 0.36
VCPP55072 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.27■□□□□ 0.36
VCPP55072 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
VCPP55072 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VCPP55072 AC007950.2-201ENST00000615045 2347 ntBASIC17.27■□□□□ 0.35
VCPP55072 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VCPP55072 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VCPP55072 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VCPP55072 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VCPP55072 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VCPP55072 AC016027.1-202ENST00000607927 1699 ntBASIC17.26■□□□□ 0.35
VCPP55072 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.26■□□□□ 0.35
VCPP55072 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.26■□□□□ 0.35
VCPP55072 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 AC007541.1-201ENST00000570282 1469 ntBASIC17.26■□□□□ 0.35
VCPP55072 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
VCPP55072 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.26■□□□□ 0.35
VCPP55072 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.26■□□□□ 0.35
VCPP55072 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.26■□□□□ 0.35
VCPP55072 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
VCPP55072 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
VCPP55072 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.26■□□□□ 0.35
VCPP55072 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VCPP55072 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC17.26■□□□□ 0.35
VCPP55072 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.26■□□□□ 0.35
VCPP55072 AC132938.2-201ENST00000579188 680 ntBASIC17.26■□□□□ 0.35
VCPP55072 MIR4525-201ENST00000580000 75 ntBASIC17.26■□□□□ 0.35
VCPP55072 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.26■□□□□ 0.35
VCPP55072 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
VCPP55072 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.26■□□□□ 0.35
VCPP55072 AL591163.1-201ENST00000641757 987 ntBASIC17.26■□□□□ 0.35
VCPP55072 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.26■□□□□ 0.35
VCPP55072 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.26■□□□□ 0.35
VCPP55072 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.26■□□□□ 0.35
VCPP55072 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
VCPP55072 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.26■□□□□ 0.35
VCPP55072 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.26■□□□□ 0.35
VCPP55072 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VCPP55072 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VCPP55072 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
VCPP55072 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.25■□□□□ 0.35
VCPP55072 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
VCPP55072 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.25■□□□□ 0.35
VCPP55072 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.25■□□□□ 0.35
VCPP55072 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VCPP55072 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.25■□□□□ 0.35
VCPP55072 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
VCPP55072 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC17.25■□□□□ 0.35
VCPP55072 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.25■□□□□ 0.35
VCPP55072 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.25■□□□□ 0.35
VCPP55072 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.25■□□□□ 0.35
VCPP55072 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms