Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 NUS1P2-201ENST00000417358 873 ntBASIC13.48□□□□□ -0.25
HOXA1P49639 POM121L3P-201ENST00000419331 1163 ntBASIC13.48□□□□□ -0.25
HOXA1P49639 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
HOXA1P49639 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
HOXA1P49639 AP000867.3-201ENST00000524675 377 ntBASIC13.48□□□□□ -0.25
HOXA1P49639 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC13.48□□□□□ -0.25
HOXA1P49639 AC010331.1-201ENST00000611423 582 ntBASIC13.48□□□□□ -0.25
HOXA1P49639 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
HOXA1P49639 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
HOXA1P49639 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
HOXA1P49639 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXA1P49639 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC13.48□□□□□ -0.25
HOXA1P49639 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC13.47□□□□□ -0.25
HOXA1P49639 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
HOXA1P49639 GID4-202ENST00000376345 1391 ntTSL 3 BASIC13.47□□□□□ -0.25
HOXA1P49639 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
HOXA1P49639 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 ABCD1P5-201ENST00000445663 754 ntBASIC13.47□□□□□ -0.25
HOXA1P49639 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC13.47□□□□□ -0.25
HOXA1P49639 GZMM-202ENST00000592501 941 ntTSL 3 BASIC13.47□□□□□ -0.25
HOXA1P49639 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC13.47□□□□□ -0.25
HOXA1P49639 DBP-204ENST00000599385 709 ntTSL 3 BASIC13.47□□□□□ -0.25
HOXA1P49639 AC013467.2-201ENST00000605472 835 ntBASIC13.47□□□□□ -0.25
HOXA1P49639 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC13.47□□□□□ -0.25
HOXA1P49639 AL139011.1-202ENST00000642063 584 ntBASIC13.47□□□□□ -0.25
HOXA1P49639 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
HOXA1P49639 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC13.47□□□□□ -0.25
HOXA1P49639 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.47□□□□□ -0.25
HOXA1P49639 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC13.47□□□□□ -0.25
HOXA1P49639 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC13.47□□□□□ -0.25
HOXA1P49639 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC13.47□□□□□ -0.25
HOXA1P49639 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXA1P49639 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
HOXA1P49639 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.46□□□□□ -0.25
HOXA1P49639 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
HOXA1P49639 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
HOXA1P49639 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.46□□□□□ -0.25
HOXA1P49639 AC079776.2-201ENST00000641154 1609 ntBASIC13.46□□□□□ -0.25
HOXA1P49639 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
HOXA1P49639 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXA1P49639 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
HOXA1P49639 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms