Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.25□□□□□ -0.13
SOX2P48431 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.25□□□□□ -0.13
SOX2P48431 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.25□□□□□ -0.13
SOX2P48431 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.25□□□□□ -0.13
SOX2P48431 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
SOX2P48431 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC14.25□□□□□ -0.13
SOX2P48431 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
SOX2P48431 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC14.25□□□□□ -0.13
SOX2P48431 HIST2H3DP1-201ENST00000401004 416 ntBASIC14.25□□□□□ -0.13
SOX2P48431 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
SOX2P48431 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC14.25□□□□□ -0.13
SOX2P48431 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.25□□□□□ -0.13
SOX2P48431 KRT18P35-201ENST00000510488 1269 ntBASIC14.25□□□□□ -0.13
SOX2P48431 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.25□□□□□ -0.13
SOX2P48431 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
SOX2P48431 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC14.25□□□□□ -0.13
SOX2P48431 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC14.25□□□□□ -0.13
SOX2P48431 IRF8-202ENST00000562492 946 ntTSL 3 BASIC14.25□□□□□ -0.13
SOX2P48431 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.25□□□□□ -0.13
SOX2P48431 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC14.25□□□□□ -0.13
SOX2P48431 REXO1L6P-202ENST00000619970 1078 ntBASIC14.25□□□□□ -0.13
SOX2P48431 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC14.25□□□□□ -0.13
SOX2P48431 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.25□□□□□ -0.13
SOX2P48431 AC023157.3-201ENST00000619086 2088 ntBASIC14.25□□□□□ -0.13
SOX2P48431 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.25□□□□□ -0.13
SOX2P48431 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX2P48431 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX2P48431 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.24□□□□□ -0.13
SOX2P48431 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX2P48431 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX2P48431 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX2P48431 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX2P48431 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX2P48431 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
SOX2P48431 RPS2P1-201ENST00000434010 821 ntBASIC14.24□□□□□ -0.13
SOX2P48431 AC136632.2-201ENST00000512891 861 ntBASIC14.24□□□□□ -0.13
SOX2P48431 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX2P48431 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC14.24□□□□□ -0.13
SOX2P48431 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX2P48431 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC14.24□□□□□ -0.13
SOX2P48431 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
SOX2P48431 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX2P48431 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
SOX2P48431 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX2P48431 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX2P48431 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX2P48431 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SOX2P48431 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.24□□□□□ -0.13
SOX2P48431 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.24□□□□□ -0.13
SOX2P48431 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
SOX2P48431 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
SOX2P48431 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
SOX2P48431 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.23□□□□□ -0.13
SOX2P48431 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
SOX2P48431 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.23□□□□□ -0.13
SOX2P48431 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms