Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CXCL12P48061 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 REXO1L8P-201ENST00000604378 1897 ntBASIC15.86■□□□□ 0.13
CXCL12P48061 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.86■□□□□ 0.13
CXCL12P48061 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC15.86■□□□□ 0.13
CXCL12P48061 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CXCL12P48061 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC15.86■□□□□ 0.13
CXCL12P48061 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CXCL12P48061 BTBD6P1-201ENST00000412176 1267 ntBASIC15.86■□□□□ 0.13
CXCL12P48061 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.86■□□□□ 0.13
CXCL12P48061 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.86■□□□□ 0.13
CXCL12P48061 IGHJ2P-201ENST00000454480 60 ntBASIC15.86■□□□□ 0.13
CXCL12P48061 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 RNA5SP423-201ENST00000517127 109 ntBASIC15.86■□□□□ 0.13
CXCL12P48061 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 GNRHR2-203ENST00000581100 1187 ntBASIC15.86■□□□□ 0.13
CXCL12P48061 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.86■□□□□ 0.13
CXCL12P48061 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC15.86■□□□□ 0.13
CXCL12P48061 AC141586.5-201ENST00000624546 2050 ntBASIC15.86■□□□□ 0.13
CXCL12P48061 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CXCL12P48061 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
CXCL12P48061 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CXCL12P48061 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CXCL12P48061 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.85■□□□□ 0.13
CXCL12P48061 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.85■□□□□ 0.13
CXCL12P48061 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
CXCL12P48061 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
CXCL12P48061 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
CXCL12P48061 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 COG4-212ENST00000564653 590 ntTSL 5 BASIC15.85■□□□□ 0.13
CXCL12P48061 AC025279.2-201ENST00000569730 653 ntBASIC15.85■□□□□ 0.13
CXCL12P48061 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC15.85■□□□□ 0.13
CXCL12P48061 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.85■□□□□ 0.13
CXCL12P48061 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.85■□□□□ 0.13
CXCL12P48061 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.85■□□□□ 0.13
CXCL12P48061 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.85■□□□□ 0.13
CXCL12P48061 AC093813.1-201ENST00000605066 256 ntBASIC15.85■□□□□ 0.13
CXCL12P48061 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC15.85■□□□□ 0.13
CXCL12P48061 PRKN-211ENST00000615065 261 ntTSL 5 BASIC15.85■□□□□ 0.13
CXCL12P48061 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.85■□□□□ 0.13
CXCL12P48061 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.85■□□□□ 0.13
CXCL12P48061 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.85■□□□□ 0.13
CXCL12P48061 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
CXCL12P48061 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
CXCL12P48061 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CXCL12P48061 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
CXCL12P48061 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.84■□□□□ 0.13
CXCL12P48061 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CXCL12P48061 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CXCL12P48061 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CXCL12P48061 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CXCL12P48061 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CXCL12P48061 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CXCL12P48061 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.84■□□□□ 0.13
CXCL12P48061 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CXCL12P48061 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CXCL12P48061 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CXCL12P48061 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CXCL12P48061 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.84■□□□□ 0.13
CXCL12P48061 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CXCL12P48061 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.84■□□□□ 0.13
CXCL12P48061 RPS3-201ENST00000278572 907 ntTSL 3 BASIC15.84■□□□□ 0.13
CXCL12P48061 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms