Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN4AP35499 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC18.6■□□□□ 0.57
SCN4AP35499 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN4AP35499 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.6■□□□□ 0.57
SCN4AP35499 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN4AP35499 AC022748.3-201ENST00000621828 275 ntBASIC18.6■□□□□ 0.57
SCN4AP35499 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC18.6■□□□□ 0.57
SCN4AP35499 AC009053.2-201ENST00000563701 2365 ntBASIC18.6■□□□□ 0.57
SCN4AP35499 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.59■□□□□ 0.57
SCN4AP35499 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN4AP35499 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN4AP35499 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SCN4AP35499 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 PCDHB18P-201ENST00000524813 2368 ntBASIC18.59■□□□□ 0.57
SCN4AP35499 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN4AP35499 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SCN4AP35499 AL353637.1-201ENST00000451571 732 ntBASIC18.59■□□□□ 0.57
SCN4AP35499 CTBP2P4-201ENST00000513884 920 ntBASIC18.59■□□□□ 0.57
SCN4AP35499 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC18.59■□□□□ 0.57
SCN4AP35499 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SCN4AP35499 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN4AP35499 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.59■□□□□ 0.57
SCN4AP35499 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SCN4AP35499 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN4AP35499 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.59■□□□□ 0.57
SCN4AP35499 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.59■□□□□ 0.57
SCN4AP35499 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SCN4AP35499 HLA-A-202ENST00000376806 1854 ntBASIC18.58■□□□□ 0.57
SCN4AP35499 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.58■□□□□ 0.57
SCN4AP35499 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SCN4AP35499 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.57
SCN4AP35499 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.57
SCN4AP35499 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN4AP35499 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN4AP35499 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
SCN4AP35499 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
SCN4AP35499 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC18.58■□□□□ 0.57
SCN4AP35499 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC18.58■□□□□ 0.57
SCN4AP35499 AL596276.2-201ENST00000447525 331 ntBASIC18.58■□□□□ 0.57
SCN4AP35499 CEP164P1-201ENST00000455142 418 ntBASIC18.58■□□□□ 0.57
SCN4AP35499 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC18.58■□□□□ 0.57
SCN4AP35499 AC106794.1-201ENST00000506935 792 ntBASIC18.58■□□□□ 0.57
SCN4AP35499 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC18.58■□□□□ 0.57
SCN4AP35499 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC18.58■□□□□ 0.57
SCN4AP35499 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
SCN4AP35499 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC18.58■□□□□ 0.57
SCN4AP35499 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.58■□□□□ 0.57
SCN4AP35499 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
SCN4AP35499 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.58■□□□□ 0.57
SCN4AP35499 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SCN4AP35499 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SCN4AP35499 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.57
SCN4AP35499 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SCN4AP35499 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
SCN4AP35499 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SCN4AP35499 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SCN4AP35499 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
SCN4AP35499 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SCN4AP35499 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SCN4AP35499 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SCN4AP35499 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC18.58■□□□□ 0.56
SCN4AP35499 AC116345.2-201ENST00000512837 523 ntBASIC18.58■□□□□ 0.56
SCN4AP35499 AC106820.3-201ENST00000561653 397 ntBASIC18.58■□□□□ 0.56
SCN4AP35499 YRDCP1-201ENST00000621419 643 ntBASIC18.58■□□□□ 0.56
SCN4AP35499 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SCN4AP35499 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.58■□□□□ 0.56
SCN4AP35499 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SCN4AP35499 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
SCN4AP35499 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.58■□□□□ 0.56
SCN4AP35499 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
SCN4AP35499 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.57■□□□□ 0.56
SCN4AP35499 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.57■□□□□ 0.56
SCN4AP35499 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC18.57■□□□□ 0.56
SCN4AP35499 POM121L8P-201ENST00000417732 1281 ntBASIC18.57■□□□□ 0.56
SCN4AP35499 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC18.57■□□□□ 0.56
SCN4AP35499 POM121L9P-203ENST00000441984 1285 ntBASIC18.57■□□□□ 0.56
SCN4AP35499 NOC2LP1-201ENST00000450578 752 ntBASIC18.57■□□□□ 0.56
SCN4AP35499 MARK2P5-201ENST00000507649 634 ntBASIC18.57■□□□□ 0.56
SCN4AP35499 PTK2-225ENST00000520892 571 ntTSL 4 BASIC18.57■□□□□ 0.56
SCN4AP35499 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC18.57■□□□□ 0.56
SCN4AP35499 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms