Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC9P31274 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
HOXC9P31274 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC9P31274 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
HOXC9P31274 BAATP1-201ENST00000412284 1225 ntBASIC21.09■□□□□ 0.97
HOXC9P31274 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC9P31274 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC21.09■□□□□ 0.97
HOXC9P31274 ACTBP11-201ENST00000436287 1126 ntBASIC21.09■□□□□ 0.97
HOXC9P31274 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC21.09■□□□□ 0.97
HOXC9P31274 AC012441.1-201ENST00000446669 685 ntBASIC21.09■□□□□ 0.97
HOXC9P31274 KRT18P43-201ENST00000469825 1281 ntBASIC21.09■□□□□ 0.97
HOXC9P31274 AP000812.2-201ENST00000538934 718 ntBASIC21.09■□□□□ 0.97
HOXC9P31274 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC21.09■□□□□ 0.97
HOXC9P31274 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC21.09■□□□□ 0.97
HOXC9P31274 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
HOXC9P31274 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC9P31274 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC9P31274 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
HOXC9P31274 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC21.09■□□□□ 0.97
HOXC9P31274 TP73-209ENST00000603362 1668 ntTSL 5 BASIC21.09■□□□□ 0.97
HOXC9P31274 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HOXC9P31274 LRRFIP1P1-201ENST00000498774 2246 ntBASIC21.08■□□□□ 0.97
HOXC9P31274 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HOXC9P31274 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
HOXC9P31274 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HOXC9P31274 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.97
HOXC9P31274 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HOXC9P31274 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HOXC9P31274 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC21.08■□□□□ 0.97
HOXC9P31274 FO681548.1-201ENST00000455617 1132 ntBASIC21.08■□□□□ 0.97
HOXC9P31274 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HOXC9P31274 AC093433.1-201ENST00000458048 571 ntBASIC21.08■□□□□ 0.97
HOXC9P31274 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HOXC9P31274 FTH1P14-201ENST00000482930 551 ntBASIC21.08■□□□□ 0.97
HOXC9P31274 AC106760.1-201ENST00000508690 800 ntBASIC21.08■□□□□ 0.97
HOXC9P31274 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC21.08■□□□□ 0.97
HOXC9P31274 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC21.08■□□□□ 0.97
HOXC9P31274 USB1-203ENST00000539737 1212 ntTSL 2 BASIC21.08■□□□□ 0.97
HOXC9P31274 CMC2-214ENST00000565925 640 ntTSL 5 BASIC21.08■□□□□ 0.97
HOXC9P31274 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC21.08■□□□□ 0.97
HOXC9P31274 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC21.08■□□□□ 0.97
HOXC9P31274 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC21.08■□□□□ 0.97
HOXC9P31274 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
HOXC9P31274 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
HOXC9P31274 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HOXC9P31274 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HOXC9P31274 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HOXC9P31274 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
HOXC9P31274 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HOXC9P31274 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
HOXC9P31274 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
HOXC9P31274 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC21.08■□□□□ 0.96
HOXC9P31274 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
HOXC9P31274 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC21.07■□□□□ 0.96
HOXC9P31274 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC21.07■□□□□ 0.96
HOXC9P31274 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.07■□□□□ 0.96
HOXC9P31274 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC21.07■□□□□ 0.96
HOXC9P31274 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC21.07■□□□□ 0.96
HOXC9P31274 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC21.07■□□□□ 0.96
HOXC9P31274 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC21.07■□□□□ 0.96
HOXC9P31274 AC009486.1-201ENST00000569860 813 ntBASIC21.07■□□□□ 0.96
HOXC9P31274 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
HOXC9P31274 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
HOXC9P31274 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC21.07■□□□□ 0.96
HOXC9P31274 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC21.07■□□□□ 0.96
HOXC9P31274 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC9P31274 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC9P31274 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC21.06■□□□□ 0.96
HOXC9P31274 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC9P31274 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC9P31274 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
HOXC9P31274 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
HOXC9P31274 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC21.06■□□□□ 0.96
HOXC9P31274 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
HOXC9P31274 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC9P31274 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC9P31274 GZMB-202ENST00000382540 816 ntTSL 5 BASIC21.06■□□□□ 0.96
HOXC9P31274 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
HOXC9P31274 AL355864.2-201ENST00000447420 863 ntBASIC21.06■□□□□ 0.96
HOXC9P31274 AC007551.1-201ENST00000457394 519 ntBASIC21.06■□□□□ 0.96
HOXC9P31274 AC026410.3-201ENST00000514280 936 ntBASIC21.06■□□□□ 0.96
HOXC9P31274 NOP2-211ENST00000540228 668 ntTSL 2 BASIC21.06■□□□□ 0.96
HOXC9P31274 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC21.06■□□□□ 0.96
HOXC9P31274 AP001063.1-201ENST00000568332 529 ntBASIC21.06■□□□□ 0.96
HOXC9P31274 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms