Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
XRCC1P18887 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.12■□□□□ 0.17
XRCC1P18887 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
XRCC1P18887 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.12■□□□□ 0.17
XRCC1P18887 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.11■□□□□ 0.17
XRCC1P18887 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.11■□□□□ 0.17
XRCC1P18887 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.11■□□□□ 0.17
XRCC1P18887 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
XRCC1P18887 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.11■□□□□ 0.17
XRCC1P18887 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.11■□□□□ 0.17
XRCC1P18887 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
XRCC1P18887 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.11■□□□□ 0.17
XRCC1P18887 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
XRCC1P18887 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 AC105233.2-201ENST00000523697 349 ntBASIC16.11■□□□□ 0.17
XRCC1P18887 AF228730.5-201ENST00000530288 346 ntBASIC16.11■□□□□ 0.17
XRCC1P18887 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.11■□□□□ 0.17
XRCC1P18887 SLC25A39P2-201ENST00000537614 270 ntBASIC16.11■□□□□ 0.17
XRCC1P18887 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.11■□□□□ 0.17
XRCC1P18887 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.11■□□□□ 0.17
XRCC1P18887 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.11■□□□□ 0.17
XRCC1P18887 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.11■□□□□ 0.17
XRCC1P18887 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.11■□□□□ 0.17
XRCC1P18887 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.11■□□□□ 0.17
XRCC1P18887 LINC02228-204ENST00000642115 2962 ntBASIC16.11■□□□□ 0.17
XRCC1P18887 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.11■□□□□ 0.17
XRCC1P18887 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.11■□□□□ 0.17
XRCC1P18887 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.11■□□□□ 0.17
XRCC1P18887 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
XRCC1P18887 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
XRCC1P18887 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
XRCC1P18887 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
XRCC1P18887 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
XRCC1P18887 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
XRCC1P18887 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.11■□□□□ 0.17
XRCC1P18887 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
XRCC1P18887 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.1■□□□□ 0.17
XRCC1P18887 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.1■□□□□ 0.17
XRCC1P18887 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
XRCC1P18887 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.1■□□□□ 0.17
XRCC1P18887 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
XRCC1P18887 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
XRCC1P18887 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.1■□□□□ 0.17
XRCC1P18887 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
XRCC1P18887 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
XRCC1P18887 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.1■□□□□ 0.17
XRCC1P18887 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.1■□□□□ 0.17
XRCC1P18887 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.1■□□□□ 0.17
XRCC1P18887 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.1■□□□□ 0.17
XRCC1P18887 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.1■□□□□ 0.17
XRCC1P18887 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.1■□□□□ 0.17
XRCC1P18887 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.1■□□□□ 0.17
XRCC1P18887 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.1■□□□□ 0.17
XRCC1P18887 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.1■□□□□ 0.17
XRCC1P18887 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.1■□□□□ 0.17
XRCC1P18887 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 AL512652.2-201ENST00000625156 1716 ntBASIC16.1■□□□□ 0.17
XRCC1P18887 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
XRCC1P18887 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms