Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.34■□□□□ 0.21
VCANP13611 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.34■□□□□ 0.21
VCANP13611 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.34■□□□□ 0.21
VCANP13611 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCANP13611 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VCANP13611 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VCANP13611 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VCANP13611 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VCANP13611 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.33■□□□□ 0.21
VCANP13611 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VCANP13611 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC16.33■□□□□ 0.2
VCANP13611 AC004522.1-201ENST00000419978 654 ntBASIC16.33■□□□□ 0.2
VCANP13611 FAM86KP-201ENST00000509817 987 ntBASIC16.33■□□□□ 0.2
VCANP13611 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
VCANP13611 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.33■□□□□ 0.2
VCANP13611 SAMD11P1-201ENST00000571429 661 ntBASIC16.33■□□□□ 0.2
VCANP13611 AC018695.6-201ENST00000614011 534 ntBASIC16.33■□□□□ 0.2
VCANP13611 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.33■□□□□ 0.2
VCANP13611 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
VCANP13611 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
VCANP13611 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VCANP13611 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VCANP13611 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VCANP13611 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VCANP13611 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.33■□□□□ 0.2
VCANP13611 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VCANP13611 SNX33P1-201ENST00000592116 1762 ntBASIC16.33■□□□□ 0.2
VCANP13611 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.33■□□□□ 0.2
VCANP13611 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC16.33■□□□□ 0.2
VCANP13611 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VCANP13611 AC093433.1-201ENST00000458048 571 ntBASIC16.33■□□□□ 0.2
VCANP13611 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.33■□□□□ 0.2
VCANP13611 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VCANP13611 AC018695.7-201ENST00000624587 2492 ntBASIC16.33■□□□□ 0.2
VCANP13611 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.33■□□□□ 0.2
VCANP13611 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VCANP13611 AL645728.1-201ENST00000366221 2101 ntBASIC16.32■□□□□ 0.2
VCANP13611 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VCANP13611 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.32■□□□□ 0.2
VCANP13611 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VCANP13611 SNX15-201ENST00000352068 771 ntTSL 5 BASIC16.32■□□□□ 0.2
VCANP13611 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VCANP13611 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.32■□□□□ 0.2
VCANP13611 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VCANP13611 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.32■□□□□ 0.2
VCANP13611 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VCANP13611 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VCANP13611 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VCANP13611 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VCANP13611 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.32■□□□□ 0.2
VCANP13611 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC16.32■□□□□ 0.2
VCANP13611 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.32■□□□□ 0.2
VCANP13611 AC103988.2-201ENST00000561804 725 ntBASIC16.32■□□□□ 0.2
VCANP13611 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
VCANP13611 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
VCANP13611 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VCANP13611 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VCANP13611 AC018892.3-201ENST00000623986 2499 ntBASIC16.32■□□□□ 0.2
VCANP13611 AL031731.1-201ENST00000642131 2094 ntBASIC16.32■□□□□ 0.2
VCANP13611 AC006335.1-201ENST00000445200 547 ntBASIC16.32■□□□□ 0.2
VCANP13611 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.32■□□□□ 0.2
VCANP13611 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.32■□□□□ 0.2
VCANP13611 AC024267.1-201ENST00000582320 895 ntBASIC16.32■□□□□ 0.2
VCANP13611 AC103691.2-201ENST00000618824 433 ntBASIC16.32■□□□□ 0.2
VCANP13611 AC022748.3-201ENST00000621828 275 ntBASIC16.32■□□□□ 0.2
VCANP13611 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.32■□□□□ 0.2
VCANP13611 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.32■□□□□ 0.2
VCANP13611 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VCANP13611 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VCANP13611 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.31■□□□□ 0.2
VCANP13611 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.31■□□□□ 0.2
VCANP13611 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
VCANP13611 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VCANP13611 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VCANP13611 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VCANP13611 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.31■□□□□ 0.2
VCANP13611 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
VCANP13611 HKR1-225ENST00000592168 566 ntTSL 4 BASIC16.31■□□□□ 0.2
VCANP13611 AC105137.3-201ENST00000617588 984 ntBASIC16.31■□□□□ 0.2
VCANP13611 AC091544.8-201ENST00000619490 361 ntBASIC16.31■□□□□ 0.2
VCANP13611 FO393412.1-201ENST00000619841 382 ntBASIC16.31■□□□□ 0.2
VCANP13611 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VCANP13611 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.31■□□□□ 0.2
VCANP13611 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VCANP13611 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.31■□□□□ 0.2
VCANP13611 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VCANP13611 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VCANP13611 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VCANP13611 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC16.31■□□□□ 0.2
VCANP13611 MIR1202-201ENST00000408529 83 ntBASIC16.31■□□□□ 0.2
VCANP13611 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC16.31■□□□□ 0.2
VCANP13611 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
VCANP13611 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC16.31■□□□□ 0.2
VCANP13611 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.31■□□□□ 0.2
VCANP13611 KRT18P55-202ENST00000578578 1546 ntBASIC16.31■□□□□ 0.2
VCANP13611 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VCANP13611 AC092171.3-201ENST00000610122 2651 ntBASIC16.31■□□□□ 0.2
VCANP13611 AC090164.3-201ENST00000610780 2143 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms