Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 MSTO2P-201ENST00000314835 1709 ntBASIC21.17■□□□□ 0.98
CSB-PGBD3P0DP91 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC21.17■□□□□ 0.98
CSB-PGBD3P0DP91 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CSB-PGBD3P0DP91 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
CSB-PGBD3P0DP91 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CSB-PGBD3P0DP91 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC21.17■□□□□ 0.98
CSB-PGBD3P0DP91 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CSB-PGBD3P0DP91 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 AL592424.1-201ENST00000563624 1536 ntBASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 TOMM22P5-201ENST00000416399 439 ntBASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 AC016694.1-201ENST00000434179 700 ntBASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 AC245100.5-201ENST00000452108 331 ntBASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 STK24-203ENST00000397517 4578 ntTSL 2 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 AC105020.1-201ENST00000435356 2205 ntBASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CSB-PGBD3P0DP91 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 ZBTB12BP-201ENST00000314232 1122 ntBASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 AC244669.2-201ENST00000612320 853 ntBASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 HLA-A-202ENST00000376806 1854 ntBASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 USE1-206ENST00000595101 1776 ntTSL 2 BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CSB-PGBD3P0DP91 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CSB-PGBD3P0DP91 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CSB-PGBD3P0DP91 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
CSB-PGBD3P0DP91 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 AC106760.1-201ENST00000508690 800 ntBASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 SLED1-202ENST00000512051 380 ntBASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 METTL26-214ENST00000614890 801 ntTSL 3 BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC21.14■□□□□ 0.97
CSB-PGBD3P0DP91 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms