Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.67■□□□□ 0.1
LDLRP01130 AD001527.2-201ENST00000622994 785 ntBASIC15.67■□□□□ 0.1
LDLRP01130 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
LDLRP01130 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 AP002414.2-201ENST00000591780 3365 ntBASIC15.67■□□□□ 0.1
LDLRP01130 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDLRP01130 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
LDLRP01130 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.66■□□□□ 0.1
LDLRP01130 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
LDLRP01130 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
LDLRP01130 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
LDLRP01130 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
LDLRP01130 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.66■□□□□ 0.1
LDLRP01130 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.66■□□□□ 0.1
LDLRP01130 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
LDLRP01130 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LDLRP01130 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.66■□□□□ 0.1
LDLRP01130 PDPK2P-202ENST00000562415 1191 ntBASIC15.66■□□□□ 0.1
LDLRP01130 AC004449.1-201ENST00000564240 433 ntBASIC15.66■□□□□ 0.1
LDLRP01130 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.66■□□□□ 0.1
LDLRP01130 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC15.66■□□□□ 0.1
LDLRP01130 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LDLRP01130 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.66■□□□□ 0.1
LDLRP01130 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.66■□□□□ 0.1
LDLRP01130 AC006504.4-201ENST00000592118 1568 ntBASIC15.66■□□□□ 0.1
LDLRP01130 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 AC013268.4-201ENST00000637413 2228 ntBASIC15.66■□□□□ 0.1
LDLRP01130 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDLRP01130 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.65■□□□□ 0.1
LDLRP01130 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
LDLRP01130 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.65■□□□□ 0.1
LDLRP01130 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.65■□□□□ 0.1
LDLRP01130 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LDLRP01130 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.65■□□□□ 0.1
LDLRP01130 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.65■□□□□ 0.1
LDLRP01130 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
LDLRP01130 ACTG1P14-201ENST00000446382 1122 ntBASIC15.65■□□□□ 0.1
LDLRP01130 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.65■□□□□ 0.1
LDLRP01130 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.65■□□□□ 0.1
LDLRP01130 IGHV3-65-201ENST00000523210 341 ntBASIC15.65■□□□□ 0.1
LDLRP01130 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.65■□□□□ 0.1
LDLRP01130 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.65■□□□□ 0.1
LDLRP01130 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.65■□□□□ 0.1
LDLRP01130 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LDLRP01130 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC15.65■□□□□ 0.1
LDLRP01130 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.65■□□□□ 0.1
LDLRP01130 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.65■□□□□ 0.1
LDLRP01130 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.65■□□□□ 0.1
LDLRP01130 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDLRP01130 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms