Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.78■□□□□ 0.12
SIX3O95343 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.78■□□□□ 0.12
SIX3O95343 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SIX3O95343 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SIX3O95343 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SIX3O95343 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SIX3O95343 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
SIX3O95343 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.77■□□□□ 0.12
SIX3O95343 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
SIX3O95343 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
SIX3O95343 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.77■□□□□ 0.12
SIX3O95343 AC022532.1-201ENST00000624563 1728 ntBASIC15.77■□□□□ 0.12
SIX3O95343 ZNF259P1-201ENST00000407656 1365 ntBASIC15.77■□□□□ 0.12
SIX3O95343 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
SIX3O95343 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SIX3O95343 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
SIX3O95343 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.77■□□□□ 0.12
SIX3O95343 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.77■□□□□ 0.12
SIX3O95343 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
SIX3O95343 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
SIX3O95343 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
SIX3O95343 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.77■□□□□ 0.12
SIX3O95343 AC011477.6-201ENST00000604980 1927 ntBASIC15.77■□□□□ 0.12
SIX3O95343 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SIX3O95343 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SIX3O95343 AC002056.1-201ENST00000395613 760 ntBASIC15.77■□□□□ 0.12
SIX3O95343 AC026396.1-201ENST00000419388 421 ntBASIC15.77■□□□□ 0.12
SIX3O95343 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.77■□□□□ 0.12
SIX3O95343 AC120114.3-201ENST00000611923 658 ntBASIC15.77■□□□□ 0.12
SIX3O95343 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.77■□□□□ 0.12
SIX3O95343 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SIX3O95343 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.77■□□□□ 0.11
SIX3O95343 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SIX3O95343 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.77■□□□□ 0.11
SIX3O95343 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SIX3O95343 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
SIX3O95343 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SIX3O95343 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SIX3O95343 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SIX3O95343 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
SIX3O95343 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.76■□□□□ 0.11
SIX3O95343 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.76■□□□□ 0.11
SIX3O95343 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
SIX3O95343 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.76■□□□□ 0.11
SIX3O95343 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.76■□□□□ 0.11
SIX3O95343 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
SIX3O95343 MED15P5-201ENST00000423150 992 ntBASIC15.76■□□□□ 0.11
SIX3O95343 KRT18P3-201ENST00000451602 1288 ntBASIC15.76■□□□□ 0.11
SIX3O95343 RNA5SP416-201ENST00000516838 111 ntBASIC15.76■□□□□ 0.11
SIX3O95343 AC112191.1-201ENST00000523689 701 ntBASIC15.76■□□□□ 0.11
SIX3O95343 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.76■□□□□ 0.11
SIX3O95343 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.76■□□□□ 0.11
SIX3O95343 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.76■□□□□ 0.11
SIX3O95343 BX640515.1-201ENST00000617215 977 ntBASIC15.76■□□□□ 0.11
SIX3O95343 FOXO1B-201ENST00000504678 1527 ntBASIC15.76■□□□□ 0.11
SIX3O95343 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.76■□□□□ 0.11
SIX3O95343 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SIX3O95343 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.76■□□□□ 0.11
SIX3O95343 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.76■□□□□ 0.11
SIX3O95343 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SIX3O95343 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.76■□□□□ 0.11
SIX3O95343 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.75■□□□□ 0.11
SIX3O95343 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.75■□□□□ 0.11
SIX3O95343 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.75■□□□□ 0.11
SIX3O95343 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
SIX3O95343 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.75■□□□□ 0.11
SIX3O95343 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
SIX3O95343 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.75■□□□□ 0.11
SIX3O95343 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SIX3O95343 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.75■□□□□ 0.11
SIX3O95343 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.75■□□□□ 0.11
SIX3O95343 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms