Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
LMX1BO60663 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.21□□□□□ -0.13
LMX1BO60663 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.21□□□□□ -0.13
LMX1BO60663 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
LMX1BO60663 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.21□□□□□ -0.13
LMX1BO60663 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
LMX1BO60663 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 BCRP1-201ENST00000444246 691 ntBASIC14.21□□□□□ -0.13
LMX1BO60663 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.21□□□□□ -0.13
LMX1BO60663 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
LMX1BO60663 AL513480.1-201ENST00000451731 511 ntBASIC14.21□□□□□ -0.13
LMX1BO60663 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.21□□□□□ -0.13
LMX1BO60663 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.21□□□□□ -0.13
LMX1BO60663 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.21□□□□□ -0.13
LMX1BO60663 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.21□□□□□ -0.13
LMX1BO60663 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.21□□□□□ -0.13
LMX1BO60663 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC14.21□□□□□ -0.13
LMX1BO60663 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.21□□□□□ -0.13
LMX1BO60663 AC092902.6-201ENST00000641783 218 ntBASIC14.21□□□□□ -0.13
LMX1BO60663 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.21□□□□□ -0.14
LMX1BO60663 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
LMX1BO60663 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
LMX1BO60663 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
LMX1BO60663 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 MIR648-201ENST00000385046 94 ntBASIC14.2□□□□□ -0.14
LMX1BO60663 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.2□□□□□ -0.14
LMX1BO60663 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.2□□□□□ -0.14
LMX1BO60663 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 AC244107.1-201ENST00000442033 332 ntBASIC14.2□□□□□ -0.14
LMX1BO60663 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 HLA-J-203ENST00000494367 1087 ntBASIC14.2□□□□□ -0.14
LMX1BO60663 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.2□□□□□ -0.14
LMX1BO60663 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.2□□□□□ -0.14
LMX1BO60663 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms